Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10843302	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10843314	0.81[EUR][1000 genomes]
rs10843315	0.81[EUR][1000 genomes]
rs11049984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11049993	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11049994	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11049996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11050000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050002	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050016	0.89[EUR][1000 genomes]
rs11050027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11050100	1.00[AMR][1000 genomes]
rs1122176	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12228134	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12313069	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16933990	1.00[AMR][1000 genomes]
rs17706344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17707217	0.87[CEU][hapmap];1.00[AMR][1000 genomes]
rs67048928	1.00[AMR][1000 genomes]
rs73061763	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73073790	1.00[AMR][1000 genomes]
rs73074110	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73074119	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7952775	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7972564	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29152600-29157000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:29153200-29157000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:29156000-29156200	Enhancers	Brain Germinal Matrix	brain
4	chr12:29156000-29156400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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