Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10843302	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10843314	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10843315	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11049982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11049984	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11049993	0.83[EUR][1000 genomes]
rs11049994	0.83[EUR][1000 genomes]
rs11049996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11050000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11050002	0.87[EUR][1000 genomes]
rs11050016	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11050027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11050100	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1122176	0.83[EUR][1000 genomes]
rs12228134	0.81[EUR][1000 genomes]
rs12313069	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16933990	0.88[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17707217	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67048928	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7307362	0.89[EUR][1000 genomes]
rs73073790	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73074110	0.83[EUR][1000 genomes]
rs73074119	0.83[EUR][1000 genomes]
rs7952775	0.83[EUR][1000 genomes]
rs7972564	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29256800-29259200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr12:29256800-29259600	Enhancers	Primary hematopoietic stem cells	blood
3	chr12:29257000-29258600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr12:29257000-29259800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:29257200-29258800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr12:29257200-29259000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr12:29257400-29258800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr12:29257400-29258800	Enhancers	Dnd41	blood
9	chr12:29257600-29258600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr12:29257600-29258800	Enhancers	Primary T cells from cord blood	blood
11	chr12:29257800-29258800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr12:29257800-29259800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:29258000-29258800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr12:29258000-29259000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr12:29258400-29258800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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