Variant report

Variant	rs12228134
Chromosome Location	chr12:29158798-29158799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10843302	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11049982	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11049984	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11049993	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11049994	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11049996	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11050000	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050002	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050016	0.87[EUR][1000 genomes]
rs1122176	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12313069	0.81[ASN][1000 genomes]
rs17706344	0.81[EUR][1000 genomes]
rs73061763	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73074110	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73074119	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7952775	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7972564	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv557888	chr12:29158183-29163291	Enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv557889	chr12:29158183-29164515	Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv557890	chr12:29158183-29167983	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29157600-29159000	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links