Variant report

Variant	rs11051458
Chromosome Location	chr12:31703684-31703685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10843946	0.83[ASN][1000 genomes]
rs11051420	0.83[ASN][1000 genomes]
rs11051457	0.83[ASN][1000 genomes]
rs11051459	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1150944	0.83[ASN][1000 genomes]
rs1150946	0.83[ASN][1000 genomes]
rs1150947	0.83[ASN][1000 genomes]
rs1150951	0.83[ASN][1000 genomes]
rs1150952	0.83[ASN][1000 genomes]
rs1150956	0.83[ASN][1000 genomes]
rs1150957	0.83[ASN][1000 genomes]
rs1150958	0.83[ASN][1000 genomes]
rs1150959	0.83[ASN][1000 genomes]
rs1150960	0.83[ASN][1000 genomes]
rs1150961	0.83[ASN][1000 genomes]
rs12299050	0.83[ASN][1000 genomes]
rs12302576	0.83[ASN][1000 genomes]
rs12305954	0.83[ASN][1000 genomes]
rs1259215	0.83[ASN][1000 genomes]
rs1259237	0.83[ASN][1000 genomes]
rs1259240	0.83[ASN][1000 genomes]
rs1259357	0.83[ASN][1000 genomes]
rs1259358	0.83[ASN][1000 genomes]
rs1259387	0.83[ASN][1000 genomes]
rs1259388	0.83[ASN][1000 genomes]
rs1259390	0.83[ASN][1000 genomes]
rs1259391	0.83[ASN][1000 genomes]
rs1259394	0.83[ASN][1000 genomes]
rs1259402	0.83[ASN][1000 genomes]
rs1259403	0.83[ASN][1000 genomes]
rs1259406	0.83[ASN][1000 genomes]
rs1259407	0.83[ASN][1000 genomes]
rs1259410	0.83[ASN][1000 genomes]
rs1259411	0.83[ASN][1000 genomes]
rs1259412	0.83[ASN][1000 genomes]
rs1259416	0.83[ASN][1000 genomes]
rs1259421	0.83[ASN][1000 genomes]
rs1259429	0.83[ASN][1000 genomes]
rs1259436	0.83[ASN][1000 genomes]
rs1259440	0.83[ASN][1000 genomes]
rs1262389	0.83[ASN][1000 genomes]
rs1262391	0.83[ASN][1000 genomes]
rs1262392	0.83[ASN][1000 genomes]
rs1267631	0.83[ASN][1000 genomes]
rs1267686	0.83[ASN][1000 genomes]
rs1267688	0.83[ASN][1000 genomes]
rs1267689	0.83[ASN][1000 genomes]
rs1270211	0.83[ASN][1000 genomes]
rs1271657	0.83[ASN][1000 genomes]
rs1271661	0.83[ASN][1000 genomes]
rs1271662	0.83[ASN][1000 genomes]
rs1273260	0.83[ASN][1000 genomes]
rs1677155	0.83[ASN][1000 genomes]
rs1677156	0.83[ASN][1000 genomes]
rs1677182	0.83[ASN][1000 genomes]
rs1677188	0.83[ASN][1000 genomes]
rs1677190	0.83[ASN][1000 genomes]
rs1716193	0.83[ASN][1000 genomes]
rs1798769	0.83[ASN][1000 genomes]
rs1798781	0.83[ASN][1000 genomes]
rs1798782	0.83[ASN][1000 genomes]
rs1864912	0.83[ASN][1000 genomes]
rs2568880	0.83[ASN][1000 genomes]
rs2568886	0.83[ASN][1000 genomes]
rs2568896	0.83[ASN][1000 genomes]
rs2617179	0.83[ASN][1000 genomes]
rs2617189	0.83[ASN][1000 genomes]
rs2617192	0.83[ASN][1000 genomes]
rs2617194	0.83[ASN][1000 genomes]
rs2617210	0.83[ASN][1000 genomes]
rs2679488	0.83[ASN][1000 genomes]
rs2679493	0.83[ASN][1000 genomes]
rs2679501	0.83[ASN][1000 genomes]
rs2679502	0.83[ASN][1000 genomes]
rs2679503	0.83[ASN][1000 genomes]
rs2682461	0.83[ASN][1000 genomes]
rs2682681	0.83[ASN][1000 genomes]
rs2682682	0.83[ASN][1000 genomes]
rs2682683	0.83[ASN][1000 genomes]
rs2682684	0.83[ASN][1000 genomes]
rs2682690	0.83[ASN][1000 genomes]
rs2682702	0.83[ASN][1000 genomes]
rs2947175	0.83[ASN][1000 genomes]
rs4931491	0.83[ASN][1000 genomes]
rs61663978	0.83[ASN][1000 genomes]
rs67985192	0.83[ASN][1000 genomes]
rs708198	0.83[ASN][1000 genomes]
rs708199	0.83[ASN][1000 genomes]
rs708201	0.83[ASN][1000 genomes]
rs708202	0.83[ASN][1000 genomes]
rs708207	0.83[ASN][1000 genomes]
rs708211	0.83[ASN][1000 genomes]
rs708218	0.83[ASN][1000 genomes]
rs708220	0.83[ASN][1000 genomes]
rs7300482	0.83[ASN][1000 genomes]
rs7302238	0.83[ASN][1000 genomes]
rs7302818	0.83[ASN][1000 genomes]
rs792874	0.83[ASN][1000 genomes]
rs793147	0.83[ASN][1000 genomes]
rs793152	0.83[ASN][1000 genomes]
rs793159	0.83[ASN][1000 genomes]
rs793172	0.83[ASN][1000 genomes]
rs793178	0.83[ASN][1000 genomes]
rs793181	0.83[ASN][1000 genomes]
rs793183	0.83[ASN][1000 genomes]
rs793187	0.83[ASN][1000 genomes]
rs793188	0.83[ASN][1000 genomes]
rs796963	0.83[ASN][1000 genomes]
rs811088	0.83[ASN][1000 genomes]
rs971294	0.83[ASN][1000 genomes]
rs973510	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv1836923	chr12:31539122-31761172	Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv898965	chr12:31631819-31771689	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv832365	chr12:31642811-31808532	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv1842653	chr12:31670378-31744033	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv983241	chr12:31701617-31712747	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31685400-31708600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:31689000-31713000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:31694400-31707400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:31696200-31722400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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