The 2.0 version of rSNPBase

Variant report

Variant rs1798769
Chromosome Location chr12:31551350-31551351
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:31535600-31560600 Weak transcription Osteobl bone
2 chr12:31536400-31624600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr12:31536600-31577400 Weak transcription Small Intestine intestine
4 chr12:31537200-31555600 Strong transcription Primary B cells from peripheral blood blood
5 chr12:31537400-31604800 Weak transcription Spleen Spleen
6 chr12:31537600-31580800 Weak transcription Primary hematopoietic stem cells blood
7 chr12:31537800-31572400 Weak transcription Stomach Mucosa stomach
8 chr12:31538000-31555600 Strong transcription Liver Liver
9 chr12:31538400-31555000 Weak transcription Brain Substantia Nigra brain
10 chr12:31538600-31551600 Strong transcription Fetal Intestine Small intestine
11 chr12:31538600-31563400 Weak transcription Colonic Mucosa Colon
12 chr12:31539000-31552600 Weak transcription Rectal Smooth Muscle rectum
13 chr12:31539600-31555800 Weak transcription NH-A brain
14 chr12:31539800-31584800 Weak transcription Fetal Heart heart
15 chr12:31540400-31565200 Weak transcription HUVEC blood vessel
16 chr12:31540800-31555800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr12:31540800-31563400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr12:31540800-31565400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr12:31540800-31572200 Weak transcription Lung lung
20 chr12:31540800-31573200 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr12:31540800-31576800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
22 chr12:31541000-31555800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr12:31542000-31578400 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr12:31542200-31554000 Weak transcription Aorta Aorta
25 chr12:31542200-31566000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr12:31542200-31583600 Weak transcription Placenta Placenta
27 chr12:31542400-31564600 Weak transcription Brain Cingulate Gyrus brain
28 chr12:31542400-31565400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr12:31542400-31571200 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr12:31542400-31645000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr12:31542600-31553200 Weak transcription HepG2 liver
32 chr12:31542600-31555800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr12:31542600-31605800 Weak transcription Colon Smooth Muscle Colon
34 chr12:31542800-31575400 Weak transcription Fetal Brain Male brain
35 chr12:31542800-31578800 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr12:31544200-31555800 Weak transcription HSMM muscle
37 chr12:31544200-31579000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr12:31544400-31552400 Weak transcription Brain Hippocampus Middle brain
39 chr12:31544400-31581400 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr12:31544600-31584200 Weak transcription Fetal Lung lung
41 chr12:31544800-31553600 Weak transcription Fetal Brain Female brain
42 chr12:31544800-31554000 Weak transcription Brain Germinal Matrix brain
43 chr12:31544800-31565000 Weak transcription Brain Inferior Temporal Lobe brain
44 chr12:31544800-31576200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr12:31545400-31552600 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr12:31545400-31559200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr12:31545800-31552600 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr12:31545800-31560400 Weak transcription Stomach Smooth Muscle stomach
49 chr12:31545800-31583600 Weak transcription Psoas Muscle Psoas
50 chr12:31546000-31552600 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015