Variant report

Variant	rs11052103
Chromosome Location	chr12:32764906-32764907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1004968	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs10771969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10771972	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10771973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10844252	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10844253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10844254	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10844255	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs10844256	0.91[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs10844257	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs10844258	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10844259	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10844260	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10844261	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10844262	0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs10844263	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10844264	0.86[ASN][1000 genomes]
rs10844265	0.86[ASN][1000 genomes]
rs10844266	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844268	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10844271	0.85[ASN][1000 genomes]
rs11052104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11052110	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11052114	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11052117	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11052123	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs11052124	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs11052126	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052128	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11831099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12311362	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12319480	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12370222	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1909510	0.90[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2133541	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2173572	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2389101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4931648	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs56397387	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61652801	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7306976	0.85[ASN][1000 genomes]
rs7962152	0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs7964947	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7966020	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs7970584	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7980205	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs999840	0.86[CEU][hapmap];0.83[JPT][hapmap]
rs999841	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv527786	chr12:32761558-32771912	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
3	chr12:32720200-32778400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:32722600-32779400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr12:32725200-32778600	Weak transcription	Fetal Brain Male	brain
6	chr12:32735400-32765000	Weak transcription	Small Intestine	intestine
7	chr12:32741800-32769600	Weak transcription	Stomach Mucosa	stomach
8	chr12:32742400-32765600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:32744200-32797600	Weak transcription	Fetal Heart	heart
10	chr12:32744800-32765000	Weak transcription	Brain Substantia Nigra	brain
11	chr12:32750000-32765000	Strong transcription	Adipose Nuclei	Adipose
12	chr12:32750000-32770400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:32753000-32774200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:32754200-32795200	Weak transcription	Primary B cells from cord blood	blood
15	chr12:32754600-32766800	Weak transcription	NH-A	brain
16	chr12:32755000-32775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr12:32755400-32800600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr12:32755600-32765200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr12:32756200-32789800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr12:32756800-32767400	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr12:32757000-32783400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr12:32757400-32767400	Strong transcription	Duodenum Mucosa	Duodenum
23	chr12:32757400-32799600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr12:32757600-32767600	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr12:32757600-32798000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:32757800-32765000	Weak transcription	Brain Angular Gyrus	brain
27	chr12:32757800-32767200	Weak transcription	NHDF-Ad	bronchial
28	chr12:32757800-32771200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr12:32757800-32778800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:32757800-32797800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr12:32758400-32799400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr12:32758600-32780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr12:32758600-32797800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:32758600-32799600	Strong transcription	Liver	Liver
35	chr12:32758600-32800400	Strong transcription	HSMM	muscle
36	chr12:32758800-32770600	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr12:32758800-32799600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr12:32759400-32767600	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr12:32759400-32769600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:32759600-32767800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr12:32759800-32765600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr12:32759800-32795000	Weak transcription	Fetal Kidney	kidney
43	chr12:32760200-32765000	Strong transcription	Fetal Muscle Trunk	muscle
44	chr12:32760200-32765000	Strong transcription	Fetal Muscle Leg	muscle
45	chr12:32760200-32765000	Strong transcription	NHEK	skin
46	chr12:32760200-32795000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr12:32760400-32765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr12:32760600-32767200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr12:32760600-32793200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr12:32760800-32765000	Strong transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links