Variant report

Variant	rs7966020
Chromosome Location	chr12:32789552-32789553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1004968	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10771969	0.91[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs10771970	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10771971	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10771972	0.82[ASN][1000 genomes]
rs10771973	0.91[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs10844252	0.82[ASN][1000 genomes]
rs10844253	0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs10844254	0.81[ASN][1000 genomes]
rs10844255	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844256	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844257	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844258	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844259	0.91[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10844260	0.91[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs10844261	0.84[ASN][1000 genomes]
rs10844262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844263	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs10844264	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844265	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844266	0.92[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10844268	0.91[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs10844270	1.00[ASN][1000 genomes]
rs10844271	0.90[ASN][1000 genomes]
rs10844272	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11052103	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs11052104	0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs11052110	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11052114	0.83[ASN][1000 genomes]
rs11052117	0.91[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11052123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052126	0.90[ASN][1000 genomes]
rs11052128	0.90[ASN][1000 genomes]
rs11052130	0.81[ASN][1000 genomes]
rs1133509	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831099	0.92[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs12311362	0.82[ASN][1000 genomes]
rs12319480	0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12370222	0.90[ASN][1000 genomes]
rs1239829	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1473652	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1875060	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880557	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2133541	0.82[ASN][1000 genomes]
rs2173572	0.82[ASN][1000 genomes]
rs2389101	0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs4438130	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56397387	0.90[ASN][1000 genomes]
rs61652801	0.91[ASN][1000 genomes]
rs6488072	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67940080	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306183	0.90[ASN][1000 genomes]
rs7306370	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306976	0.90[ASN][1000 genomes]
rs7313624	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7962152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7964947	0.92[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs7970584	0.91[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs7980205	0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
2	chr12:32744200-32797600	Weak transcription	Fetal Heart	heart
3	chr12:32754200-32795200	Weak transcription	Primary B cells from cord blood	blood
4	chr12:32755400-32800600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:32756200-32789800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr12:32757400-32799600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:32757600-32798000	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr12:32757800-32797800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr12:32758400-32799400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:32758600-32797800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:32758600-32799600	Strong transcription	Liver	Liver
12	chr12:32758600-32800400	Strong transcription	HSMM	muscle
13	chr12:32758800-32799600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr12:32759800-32795000	Weak transcription	Fetal Kidney	kidney
15	chr12:32760200-32795000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr12:32760600-32793200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr12:32762800-32799600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:32765200-32794000	Weak transcription	NHLF	lung
19	chr12:32765400-32790400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:32765800-32797000	Strong transcription	Adipose Nuclei	Adipose
21	chr12:32767400-32790600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr12:32767400-32797000	Weak transcription	Psoas Muscle	Psoas
23	chr12:32768400-32799800	Weak transcription	NHDF-Ad	bronchial
24	chr12:32771400-32796200	Strong transcription	Fetal Intestine Large	intestine
25	chr12:32772600-32796000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr12:32772600-32800000	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr12:32774800-32793000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr12:32776400-32796000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr12:32776600-32798400	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr12:32777000-32800200	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr12:32778800-32794800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr12:32778800-32800400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr12:32779000-32790800	Weak transcription	Fetal Brain Male	brain
34	chr12:32779000-32791200	Weak transcription	HMEC	breast
35	chr12:32779600-32789600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr12:32779600-32792800	Weak transcription	Stomach Mucosa	stomach
37	chr12:32779600-32800400	Weak transcription	Small Intestine	intestine
38	chr12:32779800-32790600	Weak transcription	Placenta	Placenta
39	chr12:32780800-32793000	Weak transcription	NH-A	brain
40	chr12:32781000-32791000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr12:32781200-32791200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr12:32781600-32790600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr12:32781600-32791600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr12:32782000-32790600	Weak transcription	Brain Germinal Matrix	brain
45	chr12:32782000-32791600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr12:32782000-32810600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr12:32782200-32790600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr12:32782200-32790600	Weak transcription	Brain Substantia Nigra	brain
49	chr12:32782200-32790800	Weak transcription	Fetal Brain Female	brain
50	chr12:32782200-32791400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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