Variant report

Variant	rs11052130
Chromosome Location	chr12:32803460-32803461
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGD4-1	chr12:32803414-32803698	XLOC_009705

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10771969	0.89[ASN][1000 genomes]
rs10771971	0.81[ASN][1000 genomes]
rs10771973	0.89[ASN][1000 genomes]
rs10844259	0.80[ASN][1000 genomes]
rs10844260	0.81[ASN][1000 genomes]
rs10844261	0.81[ASN][1000 genomes]
rs10844263	0.81[ASN][1000 genomes]
rs10844266	0.90[ASN][1000 genomes]
rs10844268	0.89[ASN][1000 genomes]
rs10844270	0.81[ASN][1000 genomes]
rs10844271	0.90[ASN][1000 genomes]
rs11052110	0.81[ASN][1000 genomes]
rs11052114	0.80[ASN][1000 genomes]
rs11052117	0.81[ASN][1000 genomes]
rs11052123	0.81[ASN][1000 genomes]
rs11052124	0.81[ASN][1000 genomes]
rs11052126	0.90[ASN][1000 genomes]
rs11052128	0.90[ASN][1000 genomes]
rs1133509	0.81[ASN][1000 genomes]
rs11831099	0.85[ASN][1000 genomes]
rs12319480	0.80[ASN][1000 genomes]
rs12370222	0.90[ASN][1000 genomes]
rs1875060	0.81[ASN][1000 genomes]
rs1880557	0.81[ASN][1000 genomes]
rs4438130	0.81[ASN][1000 genomes]
rs4931648	0.81[ASN][1000 genomes]
rs56397387	0.90[ASN][1000 genomes]
rs61652801	0.89[ASN][1000 genomes]
rs67940080	0.81[ASN][1000 genomes]
rs7306370	0.81[ASN][1000 genomes]
rs7306976	0.88[ASN][1000 genomes]
rs7964947	0.89[ASN][1000 genomes]
rs7966020	0.81[ASN][1000 genomes]
rs7970584	0.81[ASN][1000 genomes]
rs7980205	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047658	chr12:32792554-32835646	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv541457	chr12:32792554-32835646	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32782000-32810600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:32793600-32804400	Weak transcription	Stomach Mucosa	stomach
3	chr12:32793600-32810400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:32793600-32810800	Weak transcription	Ovary	ovary
5	chr12:32793600-32812800	Weak transcription	Aorta	Aorta
6	chr12:32793600-32813000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:32793600-32819600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:32793800-32803600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:32793800-32803800	Weak transcription	HepG2	liver
10	chr12:32793800-32810400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr12:32794000-32803600	Weak transcription	NH-A	brain
12	chr12:32794800-32812200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr12:32796000-32810400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:32797000-32812200	Weak transcription	Adipose Nuclei	Adipose
15	chr12:32798000-32806400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr12:32799600-32803600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:32799600-32810800	Weak transcription	Brain Substantia Nigra	brain
18	chr12:32799600-32812000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:32799600-32812200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:32799600-32812800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr12:32799600-32813000	Weak transcription	Left Ventricle	heart
22	chr12:32799600-32813200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr12:32800000-32803800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr12:32800800-32805000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:32803000-32804800	Enhancers	HUVEC	blood vessel
26	chr12:32803400-32804400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr12:32803400-32804600	Enhancers	HMEC	breast
28	chr12:32803400-32804600	Enhancers	NHEK	skin
29	chr12:32803400-32805200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links