Variant report

Variant	rs11052110
Chromosome Location	chr12:32777362-32777363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1004968	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs10771969	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10771970	0.82[ASN][1000 genomes]
rs10771971	0.84[ASN][1000 genomes]
rs10771972	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10771973	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844252	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10844253	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10844254	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10844255	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs10844256	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs10844257	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs10844258	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs10844259	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10844260	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844262	1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs10844263	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844264	0.91[ASN][1000 genomes]
rs10844265	0.91[ASN][1000 genomes]
rs10844266	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10844268	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10844270	0.84[ASN][1000 genomes]
rs10844271	0.91[ASN][1000 genomes]
rs10844272	0.82[ASN][1000 genomes]
rs11052103	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11052104	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11052114	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11052117	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052123	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11052124	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11052126	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11052128	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11052130	0.81[ASN][1000 genomes]
rs1133509	0.84[ASN][1000 genomes]
rs11831099	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12311362	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12319480	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12370222	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1473652	0.82[ASN][1000 genomes]
rs1875060	0.84[ASN][1000 genomes]
rs1880557	0.84[ASN][1000 genomes]
rs1909510	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs2133541	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2173572	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2389101	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4438130	0.84[ASN][1000 genomes]
rs4931648	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs56397387	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61652801	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67940080	0.84[ASN][1000 genomes]
rs7306370	0.84[ASN][1000 genomes]
rs7306976	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7962152	1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs7964947	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7966020	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs7970584	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7980205	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs999840	0.87[CEU][hapmap];0.91[TSI][hapmap]
rs999841	0.91[EUR][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
3	chr12:32720200-32778400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:32722600-32779400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr12:32725200-32778600	Weak transcription	Fetal Brain Male	brain
6	chr12:32744200-32797600	Weak transcription	Fetal Heart	heart
7	chr12:32754200-32795200	Weak transcription	Primary B cells from cord blood	blood
8	chr12:32755400-32800600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr12:32756200-32789800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr12:32757000-32783400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:32757400-32799600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:32757600-32798000	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:32757800-32778800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:32757800-32797800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:32758400-32799400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:32758600-32780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:32758600-32797800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:32758600-32799600	Strong transcription	Liver	Liver
19	chr12:32758600-32800400	Strong transcription	HSMM	muscle
20	chr12:32758800-32799600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr12:32759800-32795000	Weak transcription	Fetal Kidney	kidney
22	chr12:32760200-32795000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr12:32760600-32793200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr12:32762800-32799600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:32764600-32777600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr12:32765200-32794000	Weak transcription	NHLF	lung
27	chr12:32765400-32777400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr12:32765400-32778000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr12:32765400-32780800	Weak transcription	Pancreas	Pancrea
30	chr12:32765400-32784800	Weak transcription	Colon Smooth Muscle	Colon
31	chr12:32765400-32789000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr12:32765400-32790400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr12:32765600-32778600	Weak transcription	Spleen	Spleen
34	chr12:32765600-32780400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr12:32765800-32778600	Weak transcription	Small Intestine	intestine
36	chr12:32765800-32797000	Strong transcription	Adipose Nuclei	Adipose
37	chr12:32766200-32778600	Weak transcription	Colonic Mucosa	Colon
38	chr12:32766400-32777800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr12:32766400-32780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr12:32766600-32783400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr12:32767400-32778200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr12:32767400-32790600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr12:32767400-32797000	Weak transcription	Psoas Muscle	Psoas
44	chr12:32768400-32799800	Weak transcription	NHDF-Ad	bronchial
45	chr12:32768600-32783000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr12:32769400-32777400	Weak transcription	Gastric	stomach
47	chr12:32769400-32783200	Strong transcription	HSMMtube	muscle
48	chr12:32769600-32788200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr12:32769800-32782400	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr12:32770200-32777400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links