Variant report

Variant	rs10844272
Chromosome Location	chr12:32803747-32803748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1004968	1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs10771969	0.91[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs10771970	0.92[ASN][1000 genomes]
rs10771971	0.98[ASN][1000 genomes]
rs10771972	0.80[ASN][1000 genomes]
rs10771973	0.91[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs10844252	0.80[ASN][1000 genomes]
rs10844253	0.91[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs10844255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10844256	1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs10844257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10844258	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10844259	0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs10844260	0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs10844261	0.82[ASN][1000 genomes]
rs10844262	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10844263	0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs10844264	0.90[ASN][1000 genomes]
rs10844265	0.90[ASN][1000 genomes]
rs10844266	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10844268	0.91[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs10844270	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10844271	0.88[ASN][1000 genomes]
rs11052103	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs11052104	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs11052110	1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs11052114	0.81[ASN][1000 genomes]
rs11052117	0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs11052123	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11052124	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11052126	0.88[ASN][1000 genomes]
rs11052128	0.88[ASN][1000 genomes]
rs1133509	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11831099	0.91[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs12311362	0.80[ASN][1000 genomes]
rs12319480	0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs12370222	0.88[ASN][1000 genomes]
rs1239829	0.82[CEU][hapmap]
rs1473652	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1875060	0.98[ASN][1000 genomes]
rs1880557	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1909510	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2133541	0.80[ASN][1000 genomes]
rs2173572	0.80[ASN][1000 genomes]
rs2389101	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs4438130	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4931648	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56397387	0.88[ASN][1000 genomes]
rs61652801	0.89[ASN][1000 genomes]
rs67940080	0.98[ASN][1000 genomes]
rs7306183	0.88[ASN][1000 genomes]
rs7306370	0.98[ASN][1000 genomes]
rs7306976	0.88[ASN][1000 genomes]
rs7962152	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7964947	0.91[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs7966020	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7970584	0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7980205	0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047658	chr12:32792554-32835646	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv541457	chr12:32792554-32835646	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32782000-32810600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:32793600-32804400	Weak transcription	Stomach Mucosa	stomach
3	chr12:32793600-32810400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:32793600-32810800	Weak transcription	Ovary	ovary
5	chr12:32793600-32812800	Weak transcription	Aorta	Aorta
6	chr12:32793600-32813000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:32793600-32819600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:32793800-32803800	Weak transcription	HepG2	liver
9	chr12:32793800-32810400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr12:32794800-32812200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr12:32796000-32810400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr12:32797000-32812200	Weak transcription	Adipose Nuclei	Adipose
13	chr12:32798000-32806400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr12:32799600-32810800	Weak transcription	Brain Substantia Nigra	brain
15	chr12:32799600-32812000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:32799600-32812200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:32799600-32812800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr12:32799600-32813000	Weak transcription	Left Ventricle	heart
19	chr12:32799600-32813200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr12:32800000-32803800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr12:32800800-32805000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr12:32803000-32804800	Enhancers	HUVEC	blood vessel
23	chr12:32803400-32804400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr12:32803400-32804600	Enhancers	HMEC	breast
25	chr12:32803400-32804600	Enhancers	NHEK	skin
26	chr12:32803400-32805200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:32803600-32803800	Enhancers	NH-A	brain
28	chr12:32803600-32805000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links