Variant report
Variant | rs11052524 |
---|---|
Chromosome Location | chr12:33358657-33358658 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10772042 | 0.87[ASN][1000 genomes] |
rs10772043 | 0.87[ASN][1000 genomes] |
rs10844528 | 1.00[EUR][1000 genomes] |
rs11052504 | 0.87[ASN][1000 genomes] |
rs11052527 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11052531 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11052539 | 0.90[AMR][1000 genomes] |
rs11052542 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11052553 | 1.00[EUR][1000 genomes] |
rs11052554 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11052556 | 1.00[EUR][1000 genomes] |
rs11052588 | 1.00[EUR][1000 genomes] |
rs11615155 | 1.00[EUR][1000 genomes] |
rs12228065 | 1.00[EUR][1000 genomes] |
rs3911503 | 1.00[EUR][1000 genomes] |
rs4931698 | 0.87[ASN][1000 genomes] |
rs4931699 | 0.87[ASN][1000 genomes] |
rs55841103 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
2 | nsv1037459 | chr12:33310703-33905662 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
3 | nsv541459 | chr12:33310703-33905662 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
4 | nsv1054927 | chr12:33325003-33379954 | Enhancers ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:33358600-33359600 | Enhancers | Colon Smooth Muscle | Colon |