Variant report
| Variant | rs11052531 |
|---|---|
| Chromosome Location | chr12:33366555-33366556 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-DNM1L-6 | chr12:33366391-33366587 | l_627_chr12:33361965-33366587_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10772042 | 0.91[ASN][1000 genomes] |
| rs10772043 | 0.91[ASN][1000 genomes] |
| rs10844528 | 1.00[EUR][1000 genomes] |
| rs11052504 | 0.91[ASN][1000 genomes] |
| rs11052524 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11052527 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11052539 | 0.90[AMR][1000 genomes] |
| rs11052542 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11052553 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11052554 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11052556 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11052588 | 1.00[EUR][1000 genomes] |
| rs11615155 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12228065 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1457671 | 0.88[AMR][1000 genomes] |
| rs3911503 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4931698 | 0.91[ASN][1000 genomes] |
| rs4931699 | 0.91[ASN][1000 genomes] |
| rs55841103 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74075509 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037459 | chr12:33310703-33905662 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 3 | nsv541459 | chr12:33310703-33905662 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 4 | nsv1054927 | chr12:33325003-33379954 | Enhancers ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3445417 | chr12:33358734-33401031 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv669 | chr12:33362795-33418800 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
