Variant report
Variant | rs74075509 |
---|---|
Chromosome Location | chr12:33277130-33277131 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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rs_ID | r2[population] |
---|---|
rs10772042 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10772043 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10844467 | 0.93[AMR][1000 genomes] |
rs10844470 | 0.98[AMR][1000 genomes] |
rs10844482 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs11052432 | 0.86[AMR][1000 genomes] |
rs11052466 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11052504 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11052527 | 0.83[ASN][1000 genomes] |
rs11052531 | 0.83[ASN][1000 genomes] |
rs1125592 | 0.98[AMR][1000 genomes] |
rs12426897 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs12426910 | 0.89[AMR][1000 genomes] |
rs2166256 | 0.87[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs4931691 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs4931698 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4931699 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7305199 | 0.98[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
2 | nsv832367 | chr12:33063644-33298967 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1053849 | chr12:33132909-33279169 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv1044931 | chr12:33179957-33307362 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1046565 | chr12:33252166-33294648 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv1035521 | chr12:33265578-33293907 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | esv1815763 | chr12:33271892-33306863 | Weak transcription ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:33276800-33277200 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |