Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10772042	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10772043	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10844528	1.00[EUR][1000 genomes]
rs11052504	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11052524	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11052531	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052539	0.85[AMR][1000 genomes]
rs11052542	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11052553	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11052554	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11052556	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11052588	1.00[EUR][1000 genomes]
rs11615155	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12228065	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1457671	0.83[AMR][1000 genomes]
rs3911503	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4931698	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4931699	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55841103	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74075509	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1054927	chr12:33325003-33379954	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3445417	chr12:33358734-33401031	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33358600-33359600	Enhancers	Colon Smooth Muscle	Colon

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