Variant report

Variant	rs11053661
Chromosome Location	chr12:10340179-10340180
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11053669	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11053685	0.83[EUR][1000 genomes]
rs11053686	0.83[EUR][1000 genomes]
rs12821011	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9300225	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10334600-10340200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:10336000-10342600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:10336000-10343200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:10337200-10341800	Weak transcription	Placenta	Placenta
5	chr12:10337200-10343200	Weak transcription	Fetal Lung	lung
6	chr12:10337200-10350400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:10337400-10342200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:10337400-10344200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:10337600-10342200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:10338200-10342200	Weak transcription	NHLF	lung
11	chr12:10339200-10342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:10339200-10342400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr12:10339400-10341000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr12:10339400-10342200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr12:10339400-10347800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr12:10340000-10343200	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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