Variant report

Variant	rs11053669
Chromosome Location	chr12:10349304-10349305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11053661	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11053685	0.83[EUR][1000 genomes]
rs11053686	0.83[EUR][1000 genomes]
rs12821011	0.82[EUR][1000 genomes]
rs9300225	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10337200-10350400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:10347800-10349400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr12:10347800-10351600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:10348000-10349400	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:10348000-10349600	Enhancers	Primary B cells from cord blood	blood
6	chr12:10348400-10349400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:10348400-10349400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:10348400-10349400	Enhancers	GM12878-XiMat	blood
9	chr12:10348600-10349400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:10348800-10349400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr12:10349000-10349400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr12:10349000-10349400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr12:10349000-10349400	Enhancers	NHLF	lung
14	chr12:10349200-10352800	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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