Variant report

Variant	rs12821011
Chromosome Location	chr12:10362875-10362876
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10459095	0.90[ASN][1000 genomes]
rs10845071	0.91[ASN][1000 genomes]
rs10845072	0.89[ASN][1000 genomes]
rs11053661	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11053669	0.82[EUR][1000 genomes]
rs11053685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053686	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11053687	0.87[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11053689	0.91[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4764322	0.91[ASN][1000 genomes]
rs4764323	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4764324	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.91[ASN][1000 genomes]
rs4764327	0.82[CHB][hapmap]
rs9300225	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv520713	chr12:10362224-10364362	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10358200-10364600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:10358200-10364600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:10358600-10364600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr12:10358800-10364200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:10358800-10364200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:10358800-10365000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr12:10358800-10365000	Weak transcription	Hela-S3	cervix
8	chr12:10359200-10364200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:10360200-10364600	Weak transcription	HUVEC	blood vessel
10	chr12:10360600-10364600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr12:10360800-10364600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:10362600-10364800	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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