Variant report

Variant	rs11054070
Chromosome Location	chr12:11058547-11058548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:11058073..11060923-chr12:11099457..11101619,2	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 25 )

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs1013311	0.92[ASN][1000 genomes]
rs10161144	0.89[ASN][1000 genomes]
rs1044682	0.93[ASN][1000 genomes]
rs1044683	0.93[ASN][1000 genomes]
rs10492100	0.99[ASN][1000 genomes]
rs10492101	0.99[ASN][1000 genomes]
rs10492102	0.99[ASN][1000 genomes]
rs10772380	0.99[ASN][1000 genomes]
rs10772383	1.00[ASN][1000 genomes]
rs10772393	0.93[ASN][1000 genomes]
rs10772394	0.91[ASN][1000 genomes]
rs10772396	0.89[ASN][1000 genomes]
rs10845247	0.95[ASN][1000 genomes]
rs10845249	0.90[ASN][1000 genomes]
rs10845250	0.90[ASN][1000 genomes]
rs10845251	0.96[ASN][1000 genomes]
rs10845252	0.93[ASN][1000 genomes]
rs10845253	0.93[ASN][1000 genomes]
rs10845254	0.93[ASN][1000 genomes]
rs10845255	0.92[ASN][1000 genomes]
rs10845256	0.93[ASN][1000 genomes]
rs10845258	0.93[ASN][1000 genomes]
rs10845259	0.93[ASN][1000 genomes]
rs10845260	0.93[ASN][1000 genomes]
rs10845261	0.93[ASN][1000 genomes]
rs10845262	0.93[ASN][1000 genomes]
rs10845263	0.93[ASN][1000 genomes]
rs10845264	0.93[ASN][1000 genomes]
rs10845275	0.89[ASN][1000 genomes]
rs10845283	0.83[ASN][1000 genomes]
rs11054069	1.00[ASN][1000 genomes]
rs11054082	0.97[ASN][1000 genomes]
rs11054084	0.93[ASN][1000 genomes]
rs11054088	0.93[ASN][1000 genomes]
rs11054089	0.93[ASN][1000 genomes]
rs11054090	0.93[ASN][1000 genomes]
rs11054092	0.93[ASN][1000 genomes]
rs11054093	0.93[ASN][1000 genomes]
rs11054094	0.93[ASN][1000 genomes]
rs11054095	0.93[ASN][1000 genomes]
rs11054096	0.92[ASN][1000 genomes]
rs11054097	0.93[ASN][1000 genomes]
rs11054098	0.93[ASN][1000 genomes]
rs11054099	0.93[ASN][1000 genomes]
rs11054101	0.93[ASN][1000 genomes]
rs11054102	0.93[ASN][1000 genomes]
rs11054103	0.92[ASN][1000 genomes]
rs11054104	0.93[ASN][1000 genomes]
rs11054105	0.93[ASN][1000 genomes]
rs11054106	0.93[ASN][1000 genomes]
rs11054107	0.93[ASN][1000 genomes]
rs11054108	0.93[ASN][1000 genomes]
rs11054109	0.93[ASN][1000 genomes]
rs11054110	0.93[ASN][1000 genomes]
rs11054111	0.93[ASN][1000 genomes]
rs11054112	0.93[ASN][1000 genomes]
rs11054113	0.93[ASN][1000 genomes]
rs11054114	0.93[ASN][1000 genomes]
rs11054115	0.93[ASN][1000 genomes]
rs11054116	0.93[ASN][1000 genomes]
rs11054117	0.91[ASN][1000 genomes]
rs11054118	0.93[ASN][1000 genomes]
rs11054119	0.93[ASN][1000 genomes]
rs11054120	0.93[ASN][1000 genomes]
rs11054121	0.93[ASN][1000 genomes]
rs11054122	0.93[ASN][1000 genomes]
rs11054123	0.93[ASN][1000 genomes]
rs11054124	0.93[ASN][1000 genomes]
rs11054125	0.93[ASN][1000 genomes]
rs11054131	0.89[ASN][1000 genomes]
rs11054148	0.83[ASN][1000 genomes]
rs11054150	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11054155	0.82[ASN][1000 genomes]
rs11610105	0.92[ASN][1000 genomes]
rs12367487	0.93[ASN][1000 genomes]
rs12581501	0.83[ASN][1000 genomes]
rs1376250	0.82[ASN][1000 genomes]
rs17742991	0.86[ASN][1000 genomes]
rs17743605	0.93[ASN][1000 genomes]
rs17810798	0.93[ASN][1000 genomes]
rs2084650	0.89[ASN][1000 genomes]
rs2218820	0.89[ASN][1000 genomes]
rs2418224	0.97[ASN][1000 genomes]
rs2900554	0.89[ASN][1000 genomes]
rs3851583	0.92[ASN][1000 genomes]
rs3851586	0.92[ASN][1000 genomes]
rs3851589	0.95[ASN][1000 genomes]
rs4132154	0.89[ASN][1000 genomes]
rs4763231	0.93[ASN][1000 genomes]
rs4763232	0.93[ASN][1000 genomes]
rs4763599	0.93[ASN][1000 genomes]
rs4763602	0.89[ASN][1000 genomes]
rs4763603	0.89[ASN][1000 genomes]
rs4763611	0.82[ASN][1000 genomes]
rs61912245	0.81[ASN][1000 genomes]
rs61912247	0.85[ASN][1000 genomes]
rs61912249	0.85[ASN][1000 genomes]
rs61912291	0.83[ASN][1000 genomes]
rs61912292	0.82[ASN][1000 genomes]
rs61912293	0.82[ASN][1000 genomes]
rs61914773	0.86[ASN][1000 genomes]
rs61914781	0.86[ASN][1000 genomes]
rs61914783	0.86[ASN][1000 genomes]
rs6488332	0.93[ASN][1000 genomes]
rs7134390	0.93[ASN][1000 genomes]
rs7134527	0.93[ASN][1000 genomes]
rs7135018	0.83[ASN][1000 genomes]
rs7136588	0.89[ASN][1000 genomes]
rs7136962	0.89[ASN][1000 genomes]
rs7137212	0.93[ASN][1000 genomes]
rs7137492	0.87[ASN][1000 genomes]
rs7138108	0.99[ASN][1000 genomes]
rs7138360	0.93[ASN][1000 genomes]
rs7138535	0.92[ASN][1000 genomes]
rs7294858	0.93[ASN][1000 genomes]
rs7295278	0.92[ASN][1000 genomes]
rs7298262	0.95[ASN][1000 genomes]
rs7302130	0.81[ASN][1000 genomes]
rs7302227	0.93[ASN][1000 genomes]
rs7303183	0.93[ASN][1000 genomes]
rs7305795	0.93[ASN][1000 genomes]
rs7308469	0.93[ASN][1000 genomes]
rs7308576	0.91[ASN][1000 genomes]
rs7308933	0.93[ASN][1000 genomes]
rs7312169	0.93[ASN][1000 genomes]
rs7314608	0.93[ASN][1000 genomes]
rs7398041	0.99[ASN][1000 genomes]
rs7974464	0.82[ASN][1000 genomes]
rs7979199	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv898777	chr12:11045512-11129433	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:25)

SNP	Gene	Cis/trans	Tissue	Source
rs11054070	TAS2R9	cis	cerebellum	SCAN
rs11054070	TAS2R50	cis	parietal	SCAN
rs11054070	PRR4	cis	Thyroid	GTEx
rs11054070	TAS2R10	cis	cerebellum	SCAN
rs11054070	TAS2R50	cis	cerebellum	SCAN
rs11054070	PRR4	cis	cerebellum	SCAN
rs11054070	TAS2R13	cis	cerebellum	SCAN
rs11054070	TAS2R20	cis	parietal	SCAN
rs11054070	PRR4	cis	parietal	SCAN
rs11054070	PRR4	cis	multi-tissue	Pritchard
rs11054070	TAS2R46	cis	cerebellum	SCAN
rs11054070	TAS2R14	cis	cerebellum	SCAN
rs11054070	TAS2R19	cis	parietal	SCAN
rs11054070	TAS2R43	cis	parietal	SCAN
rs11054070	PRH1	cis	cerebellum	SCAN
rs11054070	TAS2R20	cis	cerebellum	SCAN
rs11054070	PRR4	cis	lymphoblastoid	seeQTL
rs11054070	TAS2R31	cis	cerebellum	SCAN
rs11054070	TAS2R19	cis	cerebellum	SCAN
rs11054070	TAS2R31	cis	parietal	SCAN
rs11054070	TAS2R14	cis	parietal	SCAN
rs11054070	PRH2	cis	cerebellum	SCAN
rs11054070	PEX5	cis	parietal	SCAN
rs11054070	TAS2R43	cis	cerebellum	SCAN
rs11054070	TAS2R8	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11033800-11101600	Weak transcription	Ovary	ovary
2	chr12:11034600-11059000	Weak transcription	Fetal Heart	heart
3	chr12:11039200-11070200	Weak transcription	Left Ventricle	heart
4	chr12:11051400-11058800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:11054400-11084800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:11058000-11081200	Weak transcription	Primary T cells from cord blood	blood
7	chr12:11058200-11058600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr12:11058200-11060600	Weak transcription	Fetal Lung	lung
9	chr12:11058200-11081800	Weak transcription	Aorta	Aorta

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