Variant report

Variant	rs3851586
Chromosome Location	chr12:11092621-11092622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:11091072..11093170-chr12:11322389..11325259,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256537	Chromatin interaction
ENSG00000212127	Chromatin interaction
ENSG00000256712	Chromatin interaction
ENSG00000111215	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 30 )

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1013311	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10161144	0.84[ASN][1000 genomes]
rs1044682	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1044683	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10492100	0.99[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10492101	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10492102	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10772380	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10772383	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10772393	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10772394	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10772396	0.84[ASN][1000 genomes]
rs10845247	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10845249	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10845250	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10845251	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10845252	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845253	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845254	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845255	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10845256	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845258	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845259	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845260	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845261	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845262	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845263	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845264	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845275	0.84[ASN][1000 genomes]
rs11054069	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11054070	0.92[ASN][1000 genomes]
rs11054082	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11054084	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054088	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054089	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054090	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054092	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054093	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054094	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054095	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054096	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11054097	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054098	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054099	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054101	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054102	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054103	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11054104	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054105	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054106	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054107	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054108	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054109	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054110	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054111	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054112	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054113	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054114	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054115	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054116	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054117	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11054118	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054119	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054120	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054121	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054122	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054123	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054124	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054125	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11054131	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11610105	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611410	0.85[EUR][1000 genomes]
rs12367487	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17742991	0.87[EUR][1000 genomes]
rs17743605	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17810798	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2084650	0.84[ASN][1000 genomes]
rs2218820	0.84[ASN][1000 genomes]
rs2227296	0.85[EUR][1000 genomes]
rs2418224	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2900554	0.84[ASN][1000 genomes]
rs3851583	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851589	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4132154	0.84[ASN][1000 genomes]
rs4763231	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763232	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763599	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763602	0.84[ASN][1000 genomes]
rs4763603	0.84[ASN][1000 genomes]
rs61912245	0.86[EUR][1000 genomes]
rs61912247	0.87[EUR][1000 genomes]
rs61912249	0.87[EUR][1000 genomes]
rs61914772	0.87[EUR][1000 genomes]
rs61914773	0.87[EUR][1000 genomes]
rs61914781	0.87[EUR][1000 genomes]
rs61914783	0.87[EUR][1000 genomes]
rs6488332	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7134390	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7134527	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7136588	0.84[ASN][1000 genomes]
rs7136962	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7137212	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7137492	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7138108	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7138360	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7138535	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7294858	0.87[ASN][1000 genomes]
rs7295278	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7298262	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7302227	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7303183	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7305795	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7308469	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7308576	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7308933	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7312169	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7314608	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7398041	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7979199	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv898777	chr12:11045512-11129433	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1038277	chr12:11060978-11504091	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv428272	chr12:11069845-11714921	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv832330	chr12:11077678-11206957	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:30)

SNP	Gene	Cis/trans	Tissue	Source
rs3851586	TAS2R13	cis	cerebellum	SCAN
rs3851586	TAS2R20	cis	cerebellum	SCAN
rs3851586	TAS2R50	cis	cerebellum	SCAN
rs3851586	TAS2R31	cis	parietal	SCAN
rs3851586	TAS2R14	cis	Nerve Tibial	GTEx
rs3851586	TAS2R43	cis	parietal	SCAN
rs3851586	PRR4	cis	lymphoblastoid	seeQTL
rs3851586	PRH1	cis	cerebellum	SCAN
rs3851586	PRR4	cis	Muscle Skeletal	GTEx
rs3851586	TAS2R31	cis	cerebellum	SCAN
rs3851586	TAS2R14	cis	parietal	SCAN
rs3851586	PRR4	cis	Heart Left Ventricle	GTEx
rs3851586	TAS2R19	cis	cerebellum	SCAN
rs3851586	TAS2R8	cis	cerebellum	SCAN
rs3851586	TAS2R19	cis	parietal	SCAN
rs3851586	PRR4	cis	lung	GTEx
rs3851586	TAS2R43	cis	cerebellum	SCAN
rs3851586	TAS2R46	cis	cerebellum	SCAN
rs3851586	TAS2R10	cis	cerebellum	SCAN
rs3851586	PRH2	cis	cerebellum	SCAN
rs3851586	TAS2R50	cis	parietal	SCAN
rs3851586	PRR4	cis	cerebellum	SCAN
rs3851586	PRR4	cis	parietal	SCAN
rs3851586	RP11-434C1.1	cis	Thyroid	GTEx
rs3851586	TAS2R20	cis	parietal	SCAN
rs3851586	NANOGNB	cis	parietal	SCAN
rs3851586	TAS2R14	cis	cerebellum	SCAN
rs3851586	PRR4	cis	Thyroid	GTEx
rs3851586	RP11-434C1.1	cis	lung	GTEx
rs3851586	TAS2R9	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11033800-11101600	Weak transcription	Ovary	ovary
2	chr12:11065200-11093000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr12:11069200-11094800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:11072200-11092800	Weak transcription	A549	lung
5	chr12:11078400-11095800	Weak transcription	Primary B cells from cord blood	blood
6	chr12:11080000-11095000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:11080000-11101600	Weak transcription	Left Ventricle	heart
8	chr12:11080400-11095400	Weak transcription	Psoas Muscle	Psoas
9	chr12:11082000-11101000	Weak transcription	Primary T cells from cord blood	blood
10	chr12:11082200-11094800	Weak transcription	HepG2	liver
11	chr12:11088200-11093200	Weak transcription	Brain Substantia Nigra	brain
12	chr12:11089600-11094800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:11091400-11095600	Enhancers	NHEK	skin
14	chr12:11091600-11095600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:11091600-11095800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:11091600-11095800	Enhancers	HMEC	breast
17	chr12:11092200-11093200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:11092600-11093000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:11092600-11093200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:11092600-11093400	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links