Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147383491..147386446-chr6:147390287..147393281,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12209736	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2328802	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328803	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6570788	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570789	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6901138	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6910250	0.81[AMR][1000 genomes]
rs6930740	0.84[AMR][1000 genomes]
rs6938185	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7749744	0.82[EUR][1000 genomes]
rs7751770	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767185	0.82[EUR][1000 genomes]
rs7769459	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322088	0.81[AMR][1000 genomes]
rs9322089	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9322090	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9377044	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399595	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403843	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9485141	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9497690	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv823856	chr6:147384260-147393263	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147385400-147390800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:147387000-147396600	Weak transcription	Brain Anterior Caudate	brain
3	chr6:147387200-147391000	Weak transcription	Brain Angular Gyrus	brain
4	chr6:147390600-147391000	ZNF genes & repeats	Aorta	Aorta
5	chr6:147390600-147391000	ZNF genes & repeats	Liver	Liver
6	chr6:147390600-147391200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:147390600-147391200	ZNF genes & repeats	Left Ventricle	heart
8	chr6:147390600-147391200	ZNF genes & repeats	Ovary	ovary

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