Variant report

Variant	rs9322090
Chromosome Location	chr6:147408639-147408640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147402891..147404620-chr6:147406849..147408959,2	K562	blood:
2	chr6:147203984..147206135-chr6:147407183..147409245,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1105441	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12209736	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2328802	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs2328803	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3734477	0.81[EUR][1000 genomes]
rs6570788	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6570789	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6901138	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6910250	0.83[CEU][hapmap]
rs6930740	0.82[CEU][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs6938185	0.93[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7749744	0.82[CEU][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes]
rs7751770	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7767185	0.80[EUR][1000 genomes]
rs7769459	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9322088	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs9322089	0.81[CEU][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9377044	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9386178	0.82[EUR][1000 genomes]
rs9399595	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9403843	0.85[CEU][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9403845	0.81[EUR][1000 genomes]
rs9485141	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9497690	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv274984	chr6:147405612-147408968	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147402600-147412000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:147403800-147410000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:147408400-147408800	Enhancers	Brain Anterior Caudate	brain
4	chr6:147408400-147409400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:147408400-147410000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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