Variant report

Variant	rs6570788
Chromosome Location	chr6:147389450-147389451
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147382391..147386290-chr6:147386680..147389719,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1105441	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209736	0.85[AMR][1000 genomes]
rs1881660	0.88[CEU][hapmap]
rs2328802	0.87[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328803	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3734477	0.92[CEU][hapmap]
rs6570789	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6901138	0.84[AMR][1000 genomes]
rs6910250	0.89[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes]
rs6930740	0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs6938185	0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7749744	0.88[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs7751770	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755338	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs7767185	0.81[EUR][1000 genomes]
rs7769459	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322088	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes]
rs9322089	0.92[CEU][hapmap];0.84[AMR][1000 genomes]
rs9322090	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9377044	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399595	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403843	0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9485141	0.85[AMR][1000 genomes]
rs9497690	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv823856	chr6:147384260-147393263	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147385400-147390800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:147385800-147390600	Weak transcription	Ovary	ovary
3	chr6:147387000-147396600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:147387200-147391000	Weak transcription	Brain Angular Gyrus	brain

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