Variant report

Variant	rs11058282
Chromosome Location	chr12:122951100-122951101
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:122949994..122952533-chr12:123234424..123237485,3	MCF-7	breast:
2	chr12:122947417..122950530-chr12:122951037..122954189,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139726	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10734918	0.82[EUR][1000 genomes]
rs10744208	0.81[EUR][1000 genomes]
rs10744209	0.80[EUR][1000 genomes]
rs10744210	0.82[EUR][1000 genomes]
rs10744211	0.82[EUR][1000 genomes]
rs10744217	0.81[EUR][1000 genomes]
rs10744220	0.81[EUR][1000 genomes]
rs10773167	0.82[EUR][1000 genomes]
rs10773172	0.81[EUR][1000 genomes]
rs10773176	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10773178	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10773208	0.82[EUR][1000 genomes]
rs10846792	0.80[EUR][1000 genomes]
rs10846830	0.82[EUR][1000 genomes]
rs10846920	0.80[ASN][1000 genomes]
rs10846921	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10846978	0.82[EUR][1000 genomes]
rs11057882	0.81[EUR][1000 genomes]
rs11058034	0.81[EUR][1000 genomes]
rs11058226	0.81[EUR][1000 genomes]
rs11058402	0.80[EUR][1000 genomes]
rs12425970	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1973463	0.83[EUR][1000 genomes]
rs4758643	0.82[EUR][1000 genomes]
rs4758644	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4758645	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4758646	0.80[ASN][1000 genomes]
rs4758662	0.82[EUR][1000 genomes]
rs6488958	0.80[EUR][1000 genomes]
rs6489002	0.82[EUR][1000 genomes]
rs7135419	0.82[EUR][1000 genomes]
rs7301515	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7314638	0.80[EUR][1000 genomes]
rs7398014	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7964138	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7969429	0.80[EUR][1000 genomes]
rs7974262	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv973945	chr12:122923254-122958354	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122922800-122960400	Weak transcription	Right Atrium	heart
2	chr12:122938800-122957000	Weak transcription	Thymus	Thymus
3	chr12:122939600-122955200	Weak transcription	Fetal Thymus	thymus
4	chr12:122941200-122957200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr12:122943600-122951400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr12:122944400-122957000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:122945800-122956000	Weak transcription	GM12878-XiMat	blood
8	chr12:122947400-122951600	Enhancers	Placenta	Placenta
9	chr12:122948200-122952000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:122948600-122957000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr12:122948800-122951200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr12:122948800-122951400	Weak transcription	Esophagus	oesophagus
13	chr12:122948800-122955600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:122948800-122955800	Weak transcription	Fetal Intestine Small	intestine
15	chr12:122948800-122957000	Weak transcription	Fetal Intestine Large	intestine
16	chr12:122948800-122958000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr12:122948800-122958000	Weak transcription	Psoas Muscle	Psoas
18	chr12:122949000-122955800	Weak transcription	HSMM	muscle
19	chr12:122949200-122951200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr12:122949200-122955600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:122949200-122955800	Weak transcription	HepG2	liver
22	chr12:122949600-122952600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr12:122949600-122955600	Weak transcription	Fetal Muscle Leg	muscle
24	chr12:122949600-122955800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr12:122949600-122957000	Weak transcription	Lung	lung
26	chr12:122949800-122951200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr12:122949800-122951200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr12:122949800-122951200	Weak transcription	NHEK	skin
29	chr12:122949800-122951400	Weak transcription	HMEC	breast
30	chr12:122949800-122955600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr12:122949800-122955600	Weak transcription	A549	lung
32	chr12:122949800-122955600	Weak transcription	NH-A	brain
33	chr12:122949800-122955600	Weak transcription	NHDF-Ad	bronchial
34	chr12:122949800-122955600	Weak transcription	NHLF	lung
35	chr12:122949800-122955800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr12:122949800-122955800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr12:122949800-122955800	Weak transcription	Stomach Mucosa	stomach
38	chr12:122949800-122955800	Weak transcription	Osteobl	bone
39	chr12:122949800-122957000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr12:122949800-122957200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr12:122949800-122957600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:122949800-122958000	Weak transcription	Small Intestine	intestine
43	chr12:122949800-122958200	Weak transcription	Pancreas	Pancrea
44	chr12:122950000-122951200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr12:122950000-122956000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr12:122951000-122951400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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