Variant report

Variant	rs7314638
Chromosome Location	chr12:122983460-122983461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:122882568..122884696-chr12:122981168..122984063,2	K562	blood:
2	chr12:122241026..122243237-chr12:122983167..122985698,2	K562	blood:
3	chr12:122964664..122966216-chr12:122982581..122984411,2	K562	blood:
4	chr12:122982366..122988748-chr12:123005500..123012938,17	MCF-7	breast:
5	chr12:122974949..122980917-chr12:122982980..122986294,6	MCF-7	breast:
6	chr12:122882673..122885520-chr12:122982556..122985171,3	K562	blood:
7	chr12:122905004..122910047-chr12:122982684..122986625,7	MCF-7	breast:
8	chr12:122905580..122908414-chr12:122982278..122985321,3	K562	blood:
9	chr12:122982981..122986123-chr12:123234906..123238729,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000212694	Chromatin interaction
ENSG00000139726	Chromatin interaction
ENSG00000130779	Chromatin interaction
ENSG00000252192	Chromatin interaction
ENSG00000111011	Chromatin interaction
ENSG00000139718	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000184445	Chromatin interaction
ENSG00000033030	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10734915	0.84[CHB][hapmap]
rs10734918	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10734924	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10744192	0.81[ASN][1000 genomes]
rs10744208	0.80[EUR][1000 genomes]
rs10744209	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10744210	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10744211	0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10744217	0.82[EUR][1000 genomes]
rs10744287	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10773075	0.87[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap]
rs10773088	1.00[JPT][hapmap]
rs10773103	0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap]
rs10773152	0.85[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap]
rs10773167	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10773172	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10773176	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10773178	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10773208	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773302	0.80[ASN][1000 genomes]
rs10773394	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10846664	0.87[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap]
rs10846699	0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap]
rs10846746	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10846792	0.81[EUR][1000 genomes]
rs10846830	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10846920	0.82[ASN][1000 genomes]
rs10846921	0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10846978	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10847179	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.82[TSI][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10847242	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10847415	0.81[TSI][hapmap]
rs10998	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11057882	0.80[EUR][1000 genomes]
rs11058034	0.81[EUR][1000 genomes]
rs11058226	0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11058251	0.80[EUR][1000 genomes]
rs11058282	0.80[EUR][1000 genomes]
rs11058402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369858	0.87[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap]
rs12372756	0.88[JPT][hapmap]
rs12423420	0.82[ASN][1000 genomes]
rs12425970	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1392236	0.85[AFR][1000 genomes]
rs1473553	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1803290	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1973463	0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2062506	0.87[AFR][1000 genomes]
rs2341439	0.85[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap];0.94[TSI][hapmap]
rs34129612	0.80[EUR][1000 genomes]
rs3817011	0.87[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap]
rs4319547	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs4758643	0.85[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4758644	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4758645	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4758646	0.83[ASN][1000 genomes]
rs4758648	0.85[CHB][hapmap];0.83[CHD][hapmap];0.83[TSI][hapmap]
rs4758662	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4758666	0.85[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs4997380	0.87[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap]
rs6416298	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6488958	0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs6489002	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6489071	0.87[ASN][1000 genomes]
rs6489156	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs6489157	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.84[TSI][hapmap]
rs7135419	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7294559	0.87[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap]
rs7295397	0.85[AFR][1000 genomes]
rs7301515	0.87[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7307233	0.83[YRI][hapmap]
rs7307735	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs7316149	0.83[AFR][1000 genomes]
rs7397990	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7398014	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7954006	0.89[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[YRI][hapmap]
rs7955203	0.80[ASN][1000 genomes]
rs7956480	0.87[CHD][hapmap];0.87[GIH][hapmap];0.85[TSI][hapmap]
rs7959238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7964138	0.81[ASW][hapmap];0.81[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7966094	0.85[AFR][1000 genomes]
rs7969429	0.81[EUR][1000 genomes]
rs7974262	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7975747	0.86[JPT][hapmap]
rs9705654	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9788145	0.80[EUR][1000 genomes]
rs9988963	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7314638	RNF34	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122956200-122984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:122959400-122984000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:122963600-122984000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:122973000-122984000	Weak transcription	Esophagus	oesophagus
5	chr12:122973000-122984600	Weak transcription	Gastric	stomach
6	chr12:122974000-122984000	Weak transcription	Right Ventricle	heart
7	chr12:122974200-122983600	Weak transcription	Brain Angular Gyrus	brain
8	chr12:122974200-122984400	Weak transcription	Stomach Mucosa	stomach
9	chr12:122976800-122984000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:122976800-122984000	Weak transcription	Colonic Mucosa	Colon
11	chr12:122976800-122984200	Weak transcription	Fetal Kidney	kidney
12	chr12:122977000-122983600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr12:122977000-122983800	Weak transcription	Small Intestine	intestine
14	chr12:122977000-122984000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:122977000-122984200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:122977000-122984200	Weak transcription	Aorta	Aorta
17	chr12:122977000-122984400	Weak transcription	Brain Substantia Nigra	brain
18	chr12:122977200-122983600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr12:122977200-122984200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr12:122977400-122984600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr12:122977600-122983600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr12:122977600-122983600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr12:122977600-122983800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr12:122977600-122984000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr12:122979000-122983600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr12:122980200-122984000	Weak transcription	Placenta	Placenta
27	chr12:122980200-122984000	Weak transcription	Lung	lung
28	chr12:122980200-122984800	Weak transcription	Spleen	Spleen
29	chr12:122980400-122984200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr12:122980600-122983600	Weak transcription	Adipose Nuclei	Adipose
31	chr12:122980800-122984000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr12:122981200-122983600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr12:122981200-122983800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr12:122981200-122984000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr12:122981400-122984000	Enhancers	Liver	Liver
36	chr12:122981600-122983600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr12:122981600-122984000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr12:122982000-122983600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr12:122982000-122983600	Weak transcription	Thymus	Thymus
40	chr12:122982200-122983600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr12:122982200-122983600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr12:122982200-122983800	Transcr. at gene 5' and 3'	Dnd41	blood
43	chr12:122982200-122984400	Enhancers	Primary B cells from peripheral blood	blood
44	chr12:122982200-122985600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr12:122982200-122985800	Active TSS	GM12878-XiMat	blood
46	chr12:122982400-122983800	Enhancers	Colon Smooth Muscle	Colon
47	chr12:122982400-122984000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr12:122982600-122983600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr12:122982600-122983600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr12:122982600-122983600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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