Variant report

Variant	rs11058402
Chromosome Location	chr12:122981053-122981054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122957285..122960150-chr12:122980632..122982644,3	K562	blood:
2	chr12:122979441..122982270-chr12:122988098..122990392,2	K562	blood:
3	chr12:122974150..122975877-chr12:122979384..122982110,2	MCF-7	breast:
4	chr12:122834927..122837847-chr12:122979754..122981813,2	MCF-7	breast:
5	chr12:122957285..122959191-chr12:122980632..122982750,3	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10734915	0.85[CHB][hapmap]
rs10734918	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10734924	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10744192	0.81[ASN][1000 genomes]
rs10744208	0.80[EUR][1000 genomes]
rs10744209	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10744210	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10744211	0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10744217	0.82[EUR][1000 genomes]
rs10744275	0.92[AFR][1000 genomes]
rs10744287	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10773088	1.00[JPT][hapmap]
rs10773103	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10773152	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10773167	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10773172	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10773176	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10773178	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10773208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773302	0.80[ASN][1000 genomes]
rs10773394	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10846664	0.88[JPT][hapmap]
rs10846699	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10846746	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs10846792	0.81[EUR][1000 genomes]
rs10846830	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10846920	0.82[ASN][1000 genomes]
rs10846921	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10846978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10847179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10847242	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11057882	0.80[EUR][1000 genomes]
rs11058034	0.81[EUR][1000 genomes]
rs11058226	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11058251	0.80[EUR][1000 genomes]
rs11058282	0.80[EUR][1000 genomes]
rs12369858	0.88[JPT][hapmap]
rs12372756	0.88[JPT][hapmap]
rs12423420	0.82[ASN][1000 genomes]
rs12425970	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1473553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1803290	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1973463	0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2173628	0.83[AFR][1000 genomes]
rs2341439	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs34129612	0.80[EUR][1000 genomes]
rs3817011	0.88[JPT][hapmap]
rs4319547	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4758643	0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4758644	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4758645	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4758646	0.83[ASN][1000 genomes]
rs4758648	0.85[CHB][hapmap]
rs4758662	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4758666	0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs4997380	0.88[JPT][hapmap]
rs6416298	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6488958	0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs6489002	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6489071	0.87[ASN][1000 genomes]
rs6489156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6489157	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7135419	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7294559	0.88[JPT][hapmap]
rs7301515	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7307735	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7314638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7397990	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7398014	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7954006	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7955203	0.80[ASN][1000 genomes]
rs7959238	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7964138	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7969429	0.81[EUR][1000 genomes]
rs7974262	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7975747	0.86[JPT][hapmap]
rs9705654	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9788145	0.80[EUR][1000 genomes]
rs9988963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122955200-122983400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:122955200-122983400	Strong transcription	Fetal Thymus	thymus
3	chr12:122955600-122981200	Strong transcription	Dnd41	blood
4	chr12:122955600-122982200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:122955600-122982600	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr12:122956200-122984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr12:122956600-122982400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:122956600-122982800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:122956600-122983000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:122957000-122981200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr12:122957000-122981600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:122957000-122981800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:122957000-122982600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr12:122957200-122981400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr12:122957200-122982000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:122957200-122983000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr12:122957400-122981200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr12:122958000-122982600	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr12:122959400-122984000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:122963400-122982600	Weak transcription	Fetal Heart	heart
21	chr12:122963600-122984000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr12:122967800-122982800	Strong transcription	Fetal Muscle Leg	muscle
23	chr12:122971000-122982400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr12:122972600-122982000	Strong transcription	Hela-S3	cervix
25	chr12:122973000-122984000	Weak transcription	Esophagus	oesophagus
26	chr12:122973000-122984600	Weak transcription	Gastric	stomach
27	chr12:122973200-122982400	Weak transcription	Psoas Muscle	Psoas
28	chr12:122973800-122981800	Weak transcription	Pancreas	Pancrea
29	chr12:122974000-122984000	Weak transcription	Right Ventricle	heart
30	chr12:122974200-122982000	Strong transcription	Fetal Intestine Large	intestine
31	chr12:122974200-122982800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr12:122974200-122983600	Weak transcription	Brain Angular Gyrus	brain
33	chr12:122974200-122984400	Weak transcription	Stomach Mucosa	stomach
34	chr12:122975400-122982200	Strong transcription	Fetal Stomach	stomach
35	chr12:122975800-122982800	Strong transcription	Fetal Intestine Small	intestine
36	chr12:122976800-122984000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr12:122976800-122984000	Weak transcription	Colonic Mucosa	Colon
38	chr12:122976800-122984200	Weak transcription	Fetal Kidney	kidney
39	chr12:122977000-122982400	Weak transcription	Brain Hippocampus Middle	brain
40	chr12:122977000-122982600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr12:122977000-122983600	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr12:122977000-122983800	Weak transcription	Small Intestine	intestine
43	chr12:122977000-122984000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr12:122977000-122984200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:122977000-122984200	Weak transcription	Aorta	Aorta
46	chr12:122977000-122984400	Weak transcription	Brain Substantia Nigra	brain
47	chr12:122977200-122982000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr12:122977200-122982400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr12:122977200-122982400	Weak transcription	A549	lung
50	chr12:122977200-122982400	Weak transcription	K562	blood

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