Variant report

Variant	rs11061705
Chromosome Location	chr12:1446417-1446418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:1424048..1426819-chr12:1445516..1448128,2	MCF-7	breast:
2	chr12:1446335..1449950-chr12:1451320..1454152,3	K562	blood:
3	chr12:1446375..1449359-chr12:1461325..1463031,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1005394	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1012719	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11061698	0.83[ASN][1000 genomes]
rs11061699	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11061707	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061711	0.85[AMR][1000 genomes]
rs11061712	0.88[ASN][1000 genomes]
rs11061714	0.87[ASN][1000 genomes]
rs11061737	0.87[ASN][1000 genomes]
rs11836774	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11837688	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12298813	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12301879	0.87[ASN][1000 genomes]
rs12305871	0.85[AMR][1000 genomes]
rs12306160	0.81[ASN][1000 genomes]
rs12306260	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12308521	0.87[ASN][1000 genomes]
rs12314845	0.82[AMR][1000 genomes]
rs12320911	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12423105	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1419965	0.88[ASN][1000 genomes]
rs2051843	0.87[ASN][1000 genomes]
rs34929071	0.87[ASN][1000 genomes]
rs35579512	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56126511	0.85[AMR][1000 genomes]
rs57707051	0.87[ASN][1000 genomes]
rs58639324	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59141976	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60222319	0.81[AMR][1000 genomes]
rs61913097	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61913099	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61913101	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61913128	0.87[ASN][1000 genomes]
rs6489282	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6489284	0.87[ASN][1000 genomes]
rs7136329	0.87[ASN][1000 genomes]
rs7300575	0.83[ASN][1000 genomes]
rs7300981	0.83[ASN][1000 genomes]
rs73038635	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038647	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311231	0.88[ASN][1000 genomes]
rs7313311	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766956	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs768157	0.87[ASN][1000 genomes]
rs7954162	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7956588	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956798	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963546	0.86[ASN][1000 genomes]
rs7967934	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7968583	0.87[ASN][1000 genomes]
rs7968772	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7969569	0.87[ASN][1000 genomes]
rs7972088	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972290	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7973820	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7975854	0.83[ASN][1000 genomes]
rs7978540	0.87[ASN][1000 genomes]
rs7978898	0.88[ASN][1000 genomes]
rs9943818	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898576	chr12:813411-1553450	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948760	chr12:863833-1542875	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045278	chr12:920251-1697030	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv529398	chr12:941915-1741311	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv468960	chr12:975276-1455106	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv556941	chr12:975276-1455106	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv898579	chr12:1013176-1510505	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv898580	chr12:1024688-1569097	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	esv2762958	chr12:1049279-1554962	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv1052559	chr12:1077964-1588543	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
11	nsv898581	chr12:1084783-1527359	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
12	nsv1046134	chr12:1153489-1675223	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv541344	chr12:1153489-1675223	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv1042863	chr12:1163817-1902302	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
15	nsv541345	chr12:1163817-1902302	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
16	nsv1039826	chr12:1259831-1483326	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv930996	chr12:1270113-1473328	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv1050361	chr12:1274052-1541558	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv556944	chr12:1308553-1569097	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
20	nsv898583	chr12:1314430-1507616	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	nsv470257	chr12:1314430-1514021	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv1054178	chr12:1372157-1682699	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
23	nsv541347	chr12:1372157-1682699	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
24	nsv1035935	chr12:1400974-1608625	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
25	nsv1039946	chr12:1429190-1548852	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv1044918	chr12:1432740-1584649	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
27	nsv541348	chr12:1432740-1584649	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
28	nsv556949	chr12:1437726-1514021	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
29	nsv1046515	chr12:1440896-1588543	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:1387400-1453400	Weak transcription	Thymus	Thymus
2	chr12:1413800-1447600	Weak transcription	Gastric	stomach
3	chr12:1428000-1447600	Weak transcription	Ovary	ovary
4	chr12:1428200-1447600	Weak transcription	Left Ventricle	heart
5	chr12:1428200-1448800	Weak transcription	Psoas Muscle	Psoas
6	chr12:1428200-1449000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:1428200-1449000	Weak transcription	Aorta	Aorta
8	chr12:1428200-1455000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:1428200-1500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr12:1434600-1454800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:1434600-1473000	Weak transcription	Primary B cells from cord blood	blood
12	chr12:1434600-1476600	Weak transcription	Brain Anterior Caudate	brain
13	chr12:1435600-1448800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr12:1435600-1459600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr12:1437000-1448800	Weak transcription	Right Ventricle	heart
16	chr12:1438000-1449000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:1439000-1497800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr12:1439400-1447600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr12:1439600-1457600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr12:1439800-1446600	Weak transcription	Fetal Intestine Large	intestine
21	chr12:1440000-1447200	Weak transcription	Fetal Intestine Small	intestine
22	chr12:1440000-1448800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr12:1441000-1449000	Weak transcription	Spleen	Spleen
24	chr12:1441000-1455000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr12:1441000-1458200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr12:1441000-1480200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr12:1441800-1447600	Weak transcription	K562	blood
28	chr12:1441800-1449000	Weak transcription	Esophagus	oesophagus
29	chr12:1442000-1447200	Weak transcription	HepG2	liver
30	chr12:1442000-1448800	Weak transcription	Fetal Heart	heart
31	chr12:1442000-1449000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr12:1442000-1459400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:1442200-1449000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr12:1442200-1455000	Weak transcription	Primary T cells from cord blood	blood
35	chr12:1442200-1458800	Weak transcription	NHEK	skin
36	chr12:1442400-1447600	Weak transcription	Pancreas	Pancrea
37	chr12:1442400-1459400	Weak transcription	Fetal Stomach	stomach
38	chr12:1442600-1459400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr12:1442600-1480800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr12:1444200-1481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links