Variant report

Variant	rs1107008
Chromosome Location	chr10:44853448-44853449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44852711..44854577-chr10:44854628..44857238,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1144472	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1144474	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1144475	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1144476	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1144477	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1144478	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1144479	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1144480	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1144482	0.88[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs1147877	0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147879	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147880	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1147881	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147882	0.89[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1147887	0.94[CHB][hapmap]
rs2028100	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs4948873	0.94[CHB][hapmap]
rs874304	0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs920173	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs920174	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs928565	0.94[CHB][hapmap]
rs982097	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
2	chr10:44848200-44853600	Weak transcription	Brain Substantia Nigra	brain
3	chr10:44848200-44858600	Weak transcription	Psoas Muscle	Psoas
4	chr10:44848200-44864600	Weak transcription	Fetal Kidney	kidney
5	chr10:44848200-44865000	Weak transcription	Osteobl	bone
6	chr10:44848400-44865000	Weak transcription	Right Atrium	heart
7	chr10:44848400-44867400	Weak transcription	Adipose Nuclei	Adipose
8	chr10:44848400-44867600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:44848600-44853800	Weak transcription	Ovary	ovary
10	chr10:44849400-44869000	Weak transcription	Right Ventricle	heart
11	chr10:44849800-44864800	Weak transcription	Left Ventricle	heart
12	chr10:44850600-44877600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:44851000-44853600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:44851400-44854200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:44851800-44854000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:44851800-44854800	Enhancers	Fetal Lung	lung
17	chr10:44852000-44853600	Weak transcription	Pancreas	Pancrea
18	chr10:44852000-44855000	Enhancers	Fetal Stomach	stomach
19	chr10:44852600-44854200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:44852600-44858600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:44852800-44853600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:44852800-44855200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:44852800-44858400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:44853000-44853800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:44853000-44856600	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:44853000-44858400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:44853400-44853800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:44853400-44854200	Enhancers	Colon Smooth Muscle	Colon

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