Variant report

Variant	rs1147887
Chromosome Location	chr10:44831526-44831527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44829794..44831672-chr10:44833219..44836187,2	K562	blood:
2	chr10:44827763..44830392-chr10:44830833..44832482,2	MCF-7	breast:
3	chr10:44830042..44832187-chr10:44833219..44835318,3	K562	blood:
4	chr10:44829674..44831936-chr10:44832227..44834166,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10900025	0.81[CEU][hapmap]
rs1107008	0.94[CHB][hapmap]
rs1144477	0.82[CHB][hapmap];0.85[CHD][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs1144479	0.80[AMR][1000 genomes]
rs1144480	0.92[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes]
rs1144482	0.83[ASW][hapmap];0.82[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1144485	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147878	0.82[CHB][hapmap];0.85[CHD][hapmap];0.87[MEX][hapmap]
rs1147879	0.92[MEX][hapmap];0.85[TSI][hapmap]
rs1147880	0.92[MEX][hapmap];0.85[TSI][hapmap]
rs1147881	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1147882	0.82[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1413520	0.81[CEU][hapmap]
rs1836981	0.92[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs192365	0.81[CEU][hapmap]
rs2028100	0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2505741	0.91[ASW][hapmap];0.81[CHD][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2505742	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs266078	0.81[CEU][hapmap];0.80[MEX][hapmap];0.80[MKK][hapmap]
rs4948873	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs77839	0.81[CEU][hapmap];0.80[MEX][hapmap];0.80[MKK][hapmap]
rs874304	0.81[CHB][hapmap]
rs920173	0.81[ASN][1000 genomes]
rs928565	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663658	0.84[CEU][hapmap]
rs982097	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982098	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1147887	ZNF22	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44829000-44832200	Enhancers	Fetal Muscle Trunk	muscle
2	chr10:44829000-44833600	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44829600-44832200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr10:44830400-44833200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:44830400-44836600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:44830400-44839200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:44830600-44834800	Weak transcription	Fetal Kidney	kidney
8	chr10:44830600-44836400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:44830600-44836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
11	chr10:44830800-44831600	Enhancers	HSMMtube	muscle
12	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
13	chr10:44831000-44835000	Weak transcription	Fetal Thymus	thymus
14	chr10:44831200-44833200	Enhancers	Psoas Muscle	Psoas
15	chr10:44831400-44834000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:44831400-44834800	Weak transcription	Placenta	Placenta
17	chr10:44831400-44835600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:44831400-44847200	Weak transcription	Right Atrium	heart

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