Variant report

Variant	rs982098
Chromosome Location	chr10:44828212-44828213
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10793536	0.80[CEU][hapmap]
rs1144479	0.81[AMR][1000 genomes]
rs1144480	0.81[AMR][1000 genomes]
rs1144482	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1144485	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1147879	0.81[CHB][hapmap]
rs1147880	0.81[CHB][hapmap]
rs1147882	0.89[CEU][hapmap];0.87[CHB][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1147887	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1836981	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2505741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2505742	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948873	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs928565	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs982097	0.84[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44823200-44830200	Weak transcription	Pancreas	Pancrea
2	chr10:44827800-44829800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:44828200-44829600	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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