Variant report

Variant	rs10793536
Chromosome Location	chr10:44842048-44842049
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10900025	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1144482	0.88[CEU][hapmap]
rs1147882	0.85[CEU][hapmap]
rs12264745	0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs12269106	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1360724	0.84[ASN][1000 genomes]
rs1413520	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1836981	0.81[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs192365	0.85[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2118161	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505741	0.84[CEU][hapmap]
rs266076	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs266077	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs266078	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs266079	0.83[CEU][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs751425	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751426	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs77839	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7918046	0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs928564	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663658	0.85[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs982098	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
2	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
3	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:44835800-44847400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:44836800-44847400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
7	chr10:44838800-44847400	Weak transcription	Left Ventricle	heart
8	chr10:44839600-44848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:44840800-44842800	Weak transcription	Fetal Stomach	stomach
10	chr10:44841000-44844400	Strong transcription	Adipose Nuclei	Adipose
11	chr10:44841400-44844000	Weak transcription	Thymus	Thymus

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