Variant report

Variant	rs12269106
Chromosome Location	chr10:44834374-44834375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10793536	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10900025	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12264745	0.99[ASN][1000 genomes]
rs1360724	0.99[ASN][1000 genomes]
rs1413520	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1836981	0.97[ASN][1000 genomes]
rs192365	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2118161	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs266076	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs266077	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs266078	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs266079	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs751425	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs751426	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs77839	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7918046	0.99[ASN][1000 genomes]
rs928564	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9663658	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44830400-44836600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:44830400-44839200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:44830600-44834800	Weak transcription	Fetal Kidney	kidney
4	chr10:44830600-44836400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:44830600-44836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
7	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
8	chr10:44831000-44835000	Weak transcription	Fetal Thymus	thymus
9	chr10:44831400-44834800	Weak transcription	Placenta	Placenta
10	chr10:44831400-44835600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
12	chr10:44832200-44835800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:44832800-44835000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:44833200-44839400	Weak transcription	Psoas Muscle	Psoas
15	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:44834200-44834600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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