Variant report

Variant	rs751425
Chromosome Location	chr10:44845164-44845165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10508884	0.81[CHD][hapmap]
rs10793536	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900025	0.83[ASW][hapmap];0.85[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1144482	0.85[CEU][hapmap]
rs1147882	0.85[CEU][hapmap]
rs11815919	0.81[CHD][hapmap]
rs12264745	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs12269106	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1360724	0.84[ASN][1000 genomes]
rs1413520	0.85[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17156139	0.81[CHD][hapmap]
rs1836981	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs192365	0.85[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2118161	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs266076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs266077	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs266078	0.85[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs266079	0.82[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs751426	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs77839	0.85[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7918046	0.86[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs928564	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663658	0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs751425	ZNF22	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
2	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
3	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:44835800-44847400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:44836800-44847400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
7	chr10:44838800-44847400	Weak transcription	Left Ventricle	heart
8	chr10:44839600-44848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:44843200-44845200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:44843800-44847200	Weak transcription	Fetal Stomach	stomach
11	chr10:44843800-44847400	Weak transcription	Ovary	ovary
12	chr10:44844400-44847400	Weak transcription	Adipose Nuclei	Adipose

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