Variant report

Variant	rs17156139
Chromosome Location	chr10:44845097-44845098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508884	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[ASN][1000 genomes]
rs10900025	0.89[CHD][hapmap];0.90[JPT][hapmap]
rs11238991	1.00[ASN][1000 genomes]
rs11815919	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264745	0.90[JPT][hapmap]
rs12569869	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12573553	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1413520	0.89[CHD][hapmap];0.90[JPT][hapmap]
rs1436927	0.81[MEX][hapmap]
rs1836981	0.90[JPT][hapmap]
rs192365	0.90[JPT][hapmap]
rs2028100	0.83[TSI][hapmap]
rs2028101	1.00[ASN][1000 genomes]
rs266078	0.89[CHD][hapmap];0.90[JPT][hapmap]
rs266079	1.00[JPT][hapmap]
rs34050695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34066403	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34386578	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35698464	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36095821	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4366439	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56376391	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58666734	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs751425	0.81[CHD][hapmap]
rs77839	0.89[CHD][hapmap];0.90[JPT][hapmap]
rs7904065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7918046	0.92[CHD][hapmap];0.90[JPT][hapmap]
rs9663658	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
2	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
3	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:44835800-44847400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:44836800-44847400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
7	chr10:44838800-44847400	Weak transcription	Left Ventricle	heart
8	chr10:44839600-44848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:44843200-44845200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:44843800-44847200	Weak transcription	Fetal Stomach	stomach
11	chr10:44843800-44847400	Weak transcription	Ovary	ovary
12	chr10:44844400-44847400	Weak transcription	Adipose Nuclei	Adipose

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