Variant report

Variant	rs7918046
Chromosome Location	chr10:44830727-44830728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44829794..44831672-chr10:44833219..44836187,2	K562	blood:
2	chr10:44830042..44832187-chr10:44833219..44835318,3	K562	blood:
3	chr10:44829674..44831936-chr10:44832227..44834166,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10508884	0.92[CHD][hapmap];0.90[JPT][hapmap]
rs10793536	0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs10900025	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[ASN][1000 genomes]
rs1111259	0.93[YRI][hapmap]
rs11815919	0.92[CHD][hapmap];0.90[JPT][hapmap]
rs12240817	1.00[YRI][hapmap]
rs12246602	1.00[YRI][hapmap]
rs12264745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269106	0.99[ASN][1000 genomes]
rs1360724	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413520	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[ASN][1000 genomes]
rs1436927	0.85[CHD][hapmap]
rs17156139	0.92[CHD][hapmap];0.90[JPT][hapmap]
rs1836981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs192365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2118161	0.84[ASN][1000 genomes]
rs2118162	0.87[YRI][hapmap]
rs266076	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs266077	0.99[ASN][1000 genomes]
rs266078	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.99[ASN][1000 genomes]
rs266079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4366439	0.88[JPT][hapmap]
rs751425	0.86[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs751426	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs77839	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.99[ASN][1000 genomes]
rs7904065	0.90[JPT][hapmap]
rs800323	0.85[CHD][hapmap]
rs928564	0.84[ASN][1000 genomes]
rs9663658	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7918046	ZNF22	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44829000-44831200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:44829000-44831400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:44829000-44832200	Enhancers	Fetal Muscle Trunk	muscle
4	chr10:44829000-44833600	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44829400-44831200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:44829600-44830800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:44829600-44831200	Enhancers	NHDF-Ad	bronchial
8	chr10:44829600-44832200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr10:44829800-44830800	Enhancers	Osteobl	bone
10	chr10:44829800-44831000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:44829800-44831000	Enhancers	HSMM	muscle
12	chr10:44829800-44831400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr10:44830000-44831000	Enhancers	NH-A	brain
14	chr10:44830000-44831200	Enhancers	Fetal Heart	heart
15	chr10:44830000-44831200	Enhancers	NHLF	lung
16	chr10:44830000-44831400	Enhancers	Left Ventricle	heart
17	chr10:44830200-44831200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr10:44830200-44831200	Weak transcription	Psoas Muscle	Psoas
19	chr10:44830400-44830800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:44830400-44830800	Weak transcription	Fetal Thymus	thymus
21	chr10:44830400-44833200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:44830400-44836600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:44830400-44839200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:44830600-44830800	Enhancers	Right Ventricle	heart
25	chr10:44830600-44830800	Flanking Active TSS	HSMMtube	muscle
26	chr10:44830600-44831400	Enhancers	Right Atrium	heart
27	chr10:44830600-44834800	Weak transcription	Fetal Kidney	kidney
28	chr10:44830600-44836400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:44830600-44836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links