Variant report

Variant	rs192365
Chromosome Location	chr10:44841364-44841365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10508884	0.90[JPT][hapmap]
rs10793536	0.85[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10900025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1147887	0.81[CEU][hapmap]
rs11815919	0.90[JPT][hapmap]
rs12264745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12269106	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1360724	0.99[ASN][1000 genomes]
rs1413520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17156139	0.90[JPT][hapmap]
rs1836981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2118161	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs266076	0.86[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs266077	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs266078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs266079	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4366439	0.88[JPT][hapmap]
rs751425	0.85[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs751426	0.87[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs77839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904065	0.91[JPT][hapmap]
rs7918046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs928564	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs928565	0.85[CEU][hapmap]
rs9663658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
2	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
3	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
4	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:44835800-44847400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:44836800-44847400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:44838600-44867400	Weak transcription	Spleen	Spleen
8	chr10:44838800-44847400	Weak transcription	Left Ventricle	heart
9	chr10:44839600-44848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:44840800-44842800	Weak transcription	Fetal Stomach	stomach
11	chr10:44841000-44844400	Strong transcription	Adipose Nuclei	Adipose

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