Variant report

Variant	rs1144482
Chromosome Location	chr10:44835963-44835964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44829794..44831672-chr10:44833219..44836187,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10793536	0.88[CEU][hapmap]
rs1107008	0.88[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs1144474	0.82[AMR][1000 genomes]
rs1144475	0.83[AMR][1000 genomes]
rs1144476	0.82[AMR][1000 genomes]
rs1144477	0.82[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes]
rs1144478	0.85[AMR][1000 genomes]
rs1144479	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1144480	0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1144485	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1147877	0.81[AMR][1000 genomes]
rs1147878	0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.83[AMR][1000 genomes]
rs1147879	0.86[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1147880	0.86[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1147882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147887	0.83[ASW][hapmap];0.82[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2028100	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs2505741	0.91[ASW][hapmap];0.89[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.96[MKK][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2505742	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs266076	0.85[CEU][hapmap]
rs4948873	0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs751425	0.85[CEU][hapmap]
rs874304	0.81[CHB][hapmap];0.84[AMR][1000 genomes]
rs920174	0.84[AMR][1000 genomes]
rs928565	0.83[ASW][hapmap];0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs982097	0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs982098	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1144482	ZNF22	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44830400-44836600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:44830400-44839200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:44830600-44836400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:44830600-44836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
6	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
7	chr10:44831400-44847200	Weak transcription	Right Atrium	heart
8	chr10:44833200-44839400	Weak transcription	Psoas Muscle	Psoas
9	chr10:44833600-44847400	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:44834800-44836200	Enhancers	Fetal Kidney	kidney
11	chr10:44835000-44836400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:44835000-44837600	Enhancers	Fetal Thymus	thymus
13	chr10:44835800-44847400	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links