Variant report

Variant	rs2505742
Chromosome Location	chr10:44823344-44823345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1144479	0.80[AMR][1000 genomes]
rs1144480	0.80[AMR][1000 genomes]
rs1144482	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1144485	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1147882	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1147887	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1836981	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2505741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948873	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs928565	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs982097	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs982098	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44822400-44826000	Weak transcription	Small Intestine	intestine
2	chr10:44823000-44827200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:44823200-44830200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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