Variant report

Variant	rs11070673
Chromosome Location	chr15:49276662-49276663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49270212..49274158-chr15:49275856..49280999,6	K562	blood:
2	chr15:49266790..49269088-chr15:49275755..49278343,2	MCF-7	breast:
3	chr15:49162409..49164112-chr15:49274915..49276774,2	MCF-7	breast:
4	chr15:49271383..49273670-chr15:49274415..49277356,3	K562	blood:
5	chr15:49276167..49278737-chr15:49279801..49282589,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11857773	0.84[ASN][1000 genomes]
rs12900819	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2413926	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4775790	0.82[AFR][1000 genomes]
rs4775794	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62009762	0.82[ASN][1000 genomes]
rs7164309	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11070673	COPS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268600-49279400	Weak transcription	HSMM	muscle
2	chr15:49268600-49282000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:49268600-49282600	Weak transcription	Right Ventricle	heart
4	chr15:49268800-49283200	Weak transcription	Fetal Brain Male	brain
5	chr15:49268800-49283400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr15:49268800-49283600	Weak transcription	Colonic Mucosa	Colon
7	chr15:49268800-49284400	Weak transcription	Esophagus	oesophagus
8	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:49269000-49280000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:49269000-49282800	Weak transcription	Fetal Brain Female	brain
11	chr15:49269000-49284400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:49269000-49284400	Weak transcription	Spleen	Spleen
13	chr15:49269200-49276800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:49269200-49277200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:49269200-49282600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:49269200-49283600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:49271000-49282800	Weak transcription	Gastric	stomach
18	chr15:49273000-49284400	Weak transcription	Thymus	Thymus
19	chr15:49273200-49278400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:49273400-49283400	Weak transcription	Fetal Kidney	kidney
21	chr15:49273800-49278600	Enhancers	Placenta	Placenta
22	chr15:49274200-49277200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:49274200-49282400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:49274200-49284800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:49274600-49277000	Weak transcription	Brain Anterior Caudate	brain
26	chr15:49274600-49280200	Weak transcription	Brain Angular Gyrus	brain
27	chr15:49274800-49282400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:49274800-49283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:49274800-49283400	Weak transcription	Brain Substantia Nigra	brain
30	chr15:49274800-49283600	Weak transcription	K562	blood
31	chr15:49274800-49284200	Weak transcription	HMEC	breast
32	chr15:49275000-49284400	Weak transcription	HepG2	liver
33	chr15:49275400-49277600	Enhancers	Colon Smooth Muscle	Colon
34	chr15:49275600-49277600	Enhancers	Fetal Muscle Leg	muscle
35	chr15:49275600-49283400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:49275800-49278600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr15:49275800-49281600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:49276000-49276800	Enhancers	Stomach Smooth Muscle	stomach
39	chr15:49276000-49277000	Weak transcription	Left Ventricle	heart
40	chr15:49276000-49277200	Weak transcription	Right Atrium	heart
41	chr15:49276200-49277400	Enhancers	Aorta	Aorta
42	chr15:49276200-49277600	Enhancers	Adipose Nuclei	Adipose
43	chr15:49276200-49277800	Enhancers	Fetal Stomach	stomach
44	chr15:49276200-49280000	Enhancers	Liver	Liver
45	chr15:49276400-49277200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:49276400-49278800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:49276400-49280200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:49276400-49284400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:49276400-49284400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:49276600-49276800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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