Variant report

Variant	rs7164309
Chromosome Location	chr15:49317758-49317759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49316228..49318590-chr15:49318966..49321819,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11070673	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11638215	0.94[YRI][hapmap]
rs11858814	0.86[CEU][hapmap]
rs12900819	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12901353	0.81[CEU][hapmap]
rs12905094	0.86[CEU][hapmap]
rs17435932	0.86[CEU][hapmap]
rs17472989	0.86[CEU][hapmap]
rs2289389	0.86[CEU][hapmap]
rs2413926	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34748066	0.86[CEU][hapmap]
rs4536401	0.90[YRI][hapmap]
rs4775794	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6493346	0.88[YRI][hapmap]
rs7165264	0.95[YRI][hapmap]
rs7167402	0.81[YRI][hapmap]
rs8043493	0.86[CEU][hapmap]
rs877007	0.90[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7164309	COPS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:49298400-49322000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:49298400-49322000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:49301400-49329000	Weak transcription	K562	blood
13	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
14	chr15:49304200-49318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:49304400-49318000	Weak transcription	Brain Germinal Matrix	brain
16	chr15:49308400-49318200	Weak transcription	Fetal Brain Female	brain
17	chr15:49308400-49320000	Weak transcription	HepG2	liver
18	chr15:49308400-49320200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:49308400-49327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:49308400-49327600	Weak transcription	Dnd41	blood
21	chr15:49308600-49318000	Weak transcription	Brain Angular Gyrus	brain
22	chr15:49308600-49319000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:49308600-49320000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:49308600-49320600	Weak transcription	Fetal Heart	heart
25	chr15:49308600-49323000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:49308600-49326800	Weak transcription	Esophagus	oesophagus
27	chr15:49308600-49327000	Weak transcription	Gastric	stomach
28	chr15:49308800-49320000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:49308800-49326800	Weak transcription	Fetal Thymus	thymus
30	chr15:49308800-49328200	Weak transcription	Small Intestine	intestine
31	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
33	chr15:49309200-49327600	Weak transcription	NHEK	skin
34	chr15:49309400-49318000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr15:49309400-49318200	Weak transcription	Fetal Brain Male	brain
36	chr15:49309400-49320000	Weak transcription	Colonic Mucosa	Colon
37	chr15:49309600-49318000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:49309600-49318000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:49309600-49319000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:49309600-49320200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:49309600-49321600	Weak transcription	HMEC	breast
42	chr15:49309800-49319000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr15:49309800-49319800	Weak transcription	HUVEC	blood vessel
44	chr15:49310000-49318000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr15:49310000-49319000	Weak transcription	NHLF	lung
46	chr15:49310000-49320200	Weak transcription	Hela-S3	cervix
47	chr15:49310000-49328400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:49310600-49323600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:49310600-49324400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:49311000-49318000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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