Variant report

Variant	rs7165264
Chromosome Location	chr15:49326403-49326404
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49323112..49327106-chr15:49329823..49333093,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1054307	0.96[CEU][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10775139	0.82[CEU][hapmap]
rs11070682	0.88[CEU][hapmap]
rs11638215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855740	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11858917	0.80[ASN][1000 genomes]
rs12903559	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12904344	0.86[CHB][hapmap]
rs12909616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962017	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2899427	0.88[CEU][hapmap]
rs4284578	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4423366	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4536401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4774536	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4775790	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4775792	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4775795	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4775796	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6493346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7164309	0.95[YRI][hapmap]
rs7167402	1.00[CEU][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7359317	0.80[EUR][1000 genomes]
rs8029751	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs8029914	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8037958	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs877007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920913	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7165264	GALK2	cis	Whole Blood	GTEx
rs7165264	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:49301400-49329000	Weak transcription	K562	blood
10	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
11	chr15:49308400-49327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:49308400-49327600	Weak transcription	Dnd41	blood
13	chr15:49308600-49326800	Weak transcription	Esophagus	oesophagus
14	chr15:49308600-49327000	Weak transcription	Gastric	stomach
15	chr15:49308800-49326800	Weak transcription	Fetal Thymus	thymus
16	chr15:49308800-49328200	Weak transcription	Small Intestine	intestine
17	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
19	chr15:49309200-49327600	Weak transcription	NHEK	skin
20	chr15:49310000-49328400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:49313400-49335000	Weak transcription	Pancreas	Pancrea
22	chr15:49313800-49336400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:49314200-49329000	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:49315200-49330000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:49315800-49328600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:49316000-49327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:49316600-49328200	Strong transcription	HSMM	muscle
28	chr15:49317200-49329600	Strong transcription	Placenta	Placenta
29	chr15:49317600-49327400	Weak transcription	Stomach Mucosa	stomach
30	chr15:49317800-49330200	Strong transcription	Primary B cells from cord blood	blood
31	chr15:49318000-49329200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr15:49318200-49330000	Strong transcription	Primary T cells from cord blood	blood
33	chr15:49318800-49327200	Weak transcription	Fetal Brain Male	brain
34	chr15:49319200-49327000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:49319200-49329000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:49319200-49334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:49319400-49329600	Weak transcription	Brain Germinal Matrix	brain
38	chr15:49320200-49336800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr15:49320800-49329800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:49320800-49336400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:49321000-49327000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:49321000-49327000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr15:49321000-49327000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr15:49321000-49327000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr15:49321000-49327400	Weak transcription	NHLF	lung
46	chr15:49321000-49327600	Weak transcription	GM12878-XiMat	blood
47	chr15:49321000-49328400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr15:49321000-49336400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr15:49321200-49326800	Weak transcription	Lung	lung
50	chr15:49321200-49327000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links