Variant report
| Variant | rs4423366 |
|---|---|
| Chromosome Location | chr15:49343990-49343991 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:49337187..49339180-chr15:49342164..49344158,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138593 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11638215 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11639379 | 0.80[AMR][1000 genomes] |
| rs11858917 | 0.82[AMR][1000 genomes] |
| rs12909616 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12916287 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16962017 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4536401 | 0.88[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6493346 | 0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7165264 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8029751 | 0.84[EUR][1000 genomes] |
| rs877007 | 0.89[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs935003 | 0.80[AMR][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4423366 | GALK2 | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
