Variant report

Variant	rs8029751
Chromosome Location	chr15:49323855-49323856
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49323112..49327106-chr15:49329823..49333093,3	K562	blood:
2	chr15:49322333..49324034-chr15:49436776..49439133,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11070677	0.85[YRI][hapmap]
rs11070679	0.85[YRI][hapmap];0.82[AMR][1000 genomes]
rs11542124	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11635777	0.81[TSI][hapmap]
rs11638215	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs11639379	0.93[ASN][1000 genomes]
rs11858917	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442006	0.85[GIH][hapmap]
rs12904344	0.83[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12909616	0.82[ASN][1000 genomes]
rs12916287	0.94[ASN][1000 genomes]
rs16962017	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[GIH][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs2305195	0.81[TSI][hapmap];0.85[YRI][hapmap]
rs2413928	0.93[ASN][1000 genomes]
rs2899427	0.81[CHD][hapmap]
rs3105861	0.83[CHB][hapmap]
rs4390538	0.94[ASW][hapmap];0.96[CEU][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4423366	0.84[EUR][1000 genomes]
rs4435198	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4536401	0.95[CHB][hapmap]
rs4775797	0.88[ASW][hapmap];0.80[MEX][hapmap];0.89[YRI][hapmap]
rs6493346	0.95[CHB][hapmap]
rs7165264	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs7166261	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7177541	0.85[GIH][hapmap]
rs7183756	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8033060	1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs877007	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs935003	0.93[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs8029751	MAP1A	cis	cerebellum	SCAN
rs8029751	GALK2	cis	lymphoblastoid	seeQTL
rs8029751	SPATA5L1	cis	parietal	SCAN
rs8029751	CATSPER2P1	cis	cerebellum	SCAN
rs8029751	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:49301400-49329000	Weak transcription	K562	blood
11	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
12	chr15:49308400-49327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:49308400-49327600	Weak transcription	Dnd41	blood
14	chr15:49308600-49326800	Weak transcription	Esophagus	oesophagus
15	chr15:49308600-49327000	Weak transcription	Gastric	stomach
16	chr15:49308800-49326800	Weak transcription	Fetal Thymus	thymus
17	chr15:49308800-49328200	Weak transcription	Small Intestine	intestine
18	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
20	chr15:49309200-49327600	Weak transcription	NHEK	skin
21	chr15:49310000-49328400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:49310600-49324400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:49311200-49324600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:49313400-49335000	Weak transcription	Pancreas	Pancrea
25	chr15:49313800-49336400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:49314200-49329000	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:49315200-49330000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr15:49315800-49328600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:49316000-49327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:49316600-49328200	Strong transcription	HSMM	muscle
31	chr15:49317000-49325400	Strong transcription	Liver	Liver
32	chr15:49317200-49329600	Strong transcription	Placenta	Placenta
33	chr15:49317400-49324400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:49317600-49327400	Weak transcription	Stomach Mucosa	stomach
35	chr15:49317800-49330200	Strong transcription	Primary B cells from cord blood	blood
36	chr15:49318000-49329200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:49318200-49330000	Strong transcription	Primary T cells from cord blood	blood
38	chr15:49318800-49327200	Weak transcription	Fetal Brain Male	brain
39	chr15:49319200-49324200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:49319200-49325000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:49319200-49327000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:49319200-49329000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:49319200-49334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:49319400-49329600	Weak transcription	Brain Germinal Matrix	brain
45	chr15:49320200-49336800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr15:49320800-49325000	Weak transcription	HUVEC	blood vessel
47	chr15:49320800-49329800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr15:49320800-49336400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:49321000-49324000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr15:49321000-49324200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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