Variant report

Variant	rs12442006
Chromosome Location	chr15:49341479-49341480
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11070677	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11070679	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070681	0.86[CEU][hapmap];0.80[TSI][hapmap]
rs11635777	0.95[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12441272	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12904439	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12915955	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12916364	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2305195	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34825252	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35212550	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4354871	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4480739	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4775791	0.82[AMR][1000 genomes]
rs4775793	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4775797	0.88[ASW][hapmap];1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7177541	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725815	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8026097	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8029751	0.85[GIH][hapmap]
rs935001	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs935002	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs935004	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9920868	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12442006	ZSCAN29	cis	cerebellum	SCAN
rs12442006	COPS2	cis	cerebellum	SCAN
rs12442006	CATSPER2P1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49339400-49342000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:49339600-49343600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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