Variant report

Variant	rs11070677
Chromosome Location	chr15:49300191-49300192
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11070679	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11070681	0.86[CEU][hapmap]
rs11542124	0.81[AFR][1000 genomes]
rs11635777	0.95[CEU][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12441272	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442006	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12904439	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916364	1.00[CEU][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2305195	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34825252	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35212550	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4354871	0.84[EUR][1000 genomes]
rs4390538	0.80[YRI][hapmap]
rs4775791	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4775793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168694	0.86[ASN][1000 genomes]
rs7177541	1.00[CEU][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8026097	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8029751	0.85[YRI][hapmap]
rs8033060	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs9920868	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49282800-49333400	Weak transcription	A549	lung
3	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:49285000-49302800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:49285200-49300200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:49287200-49308000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:49287600-49308000	Weak transcription	HepG2	liver
9	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:49289400-49303800	Weak transcription	Psoas Muscle	Psoas
11	chr15:49289800-49301200	Weak transcription	HMEC	breast
12	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
13	chr15:49291400-49307400	Weak transcription	Gastric	stomach
14	chr15:49291400-49307400	Weak transcription	Pancreas	Pancrea
15	chr15:49291400-49308000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:49292200-49301400	Weak transcription	Aorta	Aorta
17	chr15:49292200-49307800	Weak transcription	NHEK	skin
18	chr15:49292400-49301400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:49292800-49301400	Weak transcription	GM12878-XiMat	blood
20	chr15:49292800-49308000	Weak transcription	Fetal Heart	heart
21	chr15:49292800-49308000	Weak transcription	Small Intestine	intestine
22	chr15:49293000-49300200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:49297000-49309800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:49297200-49305000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:49297200-49305200	Strong transcription	Fetal Brain Female	brain
26	chr15:49297200-49305400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:49297200-49306000	Strong transcription	Fetal Intestine Large	intestine
28	chr15:49297200-49310000	Strong transcription	Liver	Liver
29	chr15:49297400-49305400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:49297400-49310200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:49297400-49310800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:49297600-49300400	Strong transcription	Fetal Muscle Leg	muscle
33	chr15:49297600-49309400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:49297800-49309800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:49298000-49304600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:49298000-49305200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:49298000-49305400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:49298000-49305600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:49298000-49308000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:49298000-49309800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:49298000-49311400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:49298200-49300200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:49298200-49300200	Strong transcription	Fetal Brain Male	brain
46	chr15:49298200-49300400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr15:49298200-49300400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr15:49298200-49300400	Strong transcription	Left Ventricle	heart
49	chr15:49298200-49301400	Strong transcription	Colon Smooth Muscle	Colon
50	chr15:49298200-49301600	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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