Variant report

Variant	rs11542124
Chromosome Location	chr15:49282165-49282166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49276167..49278737-chr15:49279801..49282589,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11070677	0.81[AFR][1000 genomes]
rs11639379	0.82[ASN][1000 genomes]
rs11858917	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12916287	0.83[ASN][1000 genomes]
rs12916364	0.84[AFR][1000 genomes]
rs2413928	0.82[ASN][1000 genomes]
rs4390538	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4435198	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4775797	0.81[AFR][1000 genomes]
rs7166261	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7183756	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8029751	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8033060	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs935003	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11542124	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268600-49282600	Weak transcription	Right Ventricle	heart
2	chr15:49268800-49283200	Weak transcription	Fetal Brain Male	brain
3	chr15:49268800-49283400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:49268800-49283600	Weak transcription	Colonic Mucosa	Colon
5	chr15:49268800-49284400	Weak transcription	Esophagus	oesophagus
6	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:49269000-49282800	Weak transcription	Fetal Brain Female	brain
8	chr15:49269000-49284400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:49269000-49284400	Weak transcription	Spleen	Spleen
10	chr15:49269200-49282600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:49269200-49283600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:49271000-49282800	Weak transcription	Gastric	stomach
13	chr15:49273000-49284400	Weak transcription	Thymus	Thymus
14	chr15:49273400-49283400	Weak transcription	Fetal Kidney	kidney
15	chr15:49274200-49282400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:49274200-49284800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:49274800-49282400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:49274800-49283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:49274800-49283400	Weak transcription	Brain Substantia Nigra	brain
20	chr15:49274800-49283600	Weak transcription	K562	blood
21	chr15:49274800-49284200	Weak transcription	HMEC	breast
22	chr15:49275000-49284400	Weak transcription	HepG2	liver
23	chr15:49275600-49283400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:49276400-49284400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:49276400-49284400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:49276800-49282600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:49276800-49283400	Weak transcription	NHDF-Ad	bronchial
28	chr15:49277200-49282400	Weak transcription	Fetal Intestine Large	intestine
29	chr15:49277200-49282800	Weak transcription	HSMMtube	muscle
30	chr15:49277200-49283400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:49277200-49284200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:49277400-49282400	Weak transcription	Brain Hippocampus Middle	brain
33	chr15:49277400-49282600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr15:49277400-49282800	Weak transcription	Brain Germinal Matrix	brain
35	chr15:49277400-49283400	Weak transcription	Fetal Heart	heart
36	chr15:49277400-49283400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr15:49277400-49283400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr15:49277400-49283400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:49277400-49283600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr15:49277400-49284400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:49277400-49284400	Weak transcription	Aorta	Aorta
42	chr15:49277400-49284400	Weak transcription	Fetal Intestine Small	intestine
43	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:49277600-49282200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:49277600-49282800	Weak transcription	Fetal Muscle Leg	muscle
46	chr15:49277600-49282800	Weak transcription	Left Ventricle	heart
47	chr15:49277600-49284000	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:49277600-49284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:49277800-49282600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:49277800-49283200	Weak transcription	Fetal Lung	lung

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