Variant report

Variant	rs4435198
Chromosome Location	chr15:49296722-49296723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1054307	0.82[ASN][1000 genomes]
rs11542124	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11858917	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12903559	0.82[ASN][1000 genomes]
rs4284578	0.82[ASN][1000 genomes]
rs4390538	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4774536	0.82[ASN][1000 genomes]
rs4775795	0.82[ASN][1000 genomes]
rs4775796	0.82[ASN][1000 genomes]
rs7166261	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7167402	0.82[ASN][1000 genomes]
rs7183756	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8029751	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8029914	0.82[ASN][1000 genomes]
rs8033060	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4435198	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:49282800-49333400	Weak transcription	A549	lung
4	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:49285000-49299200	Weak transcription	Colonic Mucosa	Colon
6	chr15:49285000-49299400	Weak transcription	Right Ventricle	heart
7	chr15:49285000-49302800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:49285200-49298200	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:49285200-49300200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:49285400-49297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:49285600-49297200	Weak transcription	Fetal Intestine Small	intestine
13	chr15:49285600-49297200	Weak transcription	Fetal Stomach	stomach
14	chr15:49287200-49308000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:49287600-49308000	Weak transcription	HepG2	liver
16	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:49289400-49303800	Weak transcription	Psoas Muscle	Psoas
18	chr15:49289800-49301200	Weak transcription	HMEC	breast
19	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
20	chr15:49290200-49299200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:49291400-49299200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:49291400-49299200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:49291400-49307400	Weak transcription	Gastric	stomach
24	chr15:49291400-49307400	Weak transcription	Pancreas	Pancrea
25	chr15:49291400-49308000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:49291600-49298200	Weak transcription	Thymus	Thymus
27	chr15:49291600-49299200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:49292000-49298200	Weak transcription	Fetal Brain Male	brain
29	chr15:49292200-49298200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:49292200-49299200	Weak transcription	Spleen	Spleen
31	chr15:49292200-49299800	Weak transcription	K562	blood
32	chr15:49292200-49301400	Weak transcription	Aorta	Aorta
33	chr15:49292200-49307800	Weak transcription	NHEK	skin
34	chr15:49292400-49301400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:49292600-49298200	Weak transcription	Osteobl	bone
36	chr15:49292800-49297000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr15:49292800-49297000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:49292800-49297200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:49292800-49297200	Weak transcription	Fetal Brain Female	brain
40	chr15:49292800-49298200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:49292800-49298200	Weak transcription	Fetal Kidney	kidney
42	chr15:49292800-49298200	Weak transcription	Ovary	ovary
43	chr15:49292800-49299200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:49292800-49299200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:49292800-49299600	Weak transcription	HUVEC	blood vessel
46	chr15:49292800-49300000	Weak transcription	NHLF	lung
47	chr15:49292800-49301400	Weak transcription	GM12878-XiMat	blood
48	chr15:49292800-49308000	Weak transcription	Fetal Heart	heart
49	chr15:49292800-49308000	Weak transcription	Small Intestine	intestine
50	chr15:49293000-49297200	Weak transcription	Liver	Liver

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