Variant report

Variant	rs7183756
Chromosome Location	chr15:49307027-49307028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1054307	0.81[ASN][1000 genomes]
rs11542124	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11858917	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12903559	0.81[ASN][1000 genomes]
rs4284578	0.81[ASN][1000 genomes]
rs4390538	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4435198	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4774536	0.81[ASN][1000 genomes]
rs4775795	0.81[ASN][1000 genomes]
rs4775796	0.81[ASN][1000 genomes]
rs7166261	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7167402	0.81[ASN][1000 genomes]
rs8029751	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8029914	0.81[ASN][1000 genomes]
rs8033060	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7183756	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49282800-49333400	Weak transcription	A549	lung
3	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:49287200-49308000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:49287600-49308000	Weak transcription	HepG2	liver
7	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
9	chr15:49291400-49307400	Weak transcription	Gastric	stomach
10	chr15:49291400-49307400	Weak transcription	Pancreas	Pancrea
11	chr15:49291400-49308000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:49292200-49307800	Weak transcription	NHEK	skin
13	chr15:49292800-49308000	Weak transcription	Fetal Heart	heart
14	chr15:49292800-49308000	Weak transcription	Small Intestine	intestine
15	chr15:49297000-49309800	Strong transcription	Duodenum Mucosa	Duodenum
16	chr15:49297200-49310000	Strong transcription	Liver	Liver
17	chr15:49297400-49310200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:49297400-49310800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:49297600-49309400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:49297800-49309800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:49298000-49308000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:49298000-49309800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:49298000-49311400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:49298200-49308800	Strong transcription	Fetal Thymus	thymus
27	chr15:49298200-49309600	Strong transcription	Primary T cells from cord blood	blood
28	chr15:49298200-49309600	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr15:49298200-49309600	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr15:49298200-49309800	Strong transcription	Fetal Lung	lung
31	chr15:49298200-49309800	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:49298200-49310000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:49298200-49310200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:49298200-49310200	Strong transcription	Osteobl	bone
35	chr15:49298200-49314600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:49298200-49314600	Strong transcription	Adipose Nuclei	Adipose
37	chr15:49298200-49316200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr15:49298200-49316400	Strong transcription	Placenta	Placenta
39	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:49298400-49309800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr15:49298400-49314000	Strong transcription	HSMM	muscle
42	chr15:49298400-49322000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:49298400-49322000	Strong transcription	Primary B cells from peripheral blood	blood
44	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:49299000-49309800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:49299200-49310200	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:49299400-49310000	Strong transcription	Primary B cells from cord blood	blood
49	chr15:49299600-49308000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:49299600-49309600	Strong transcription	Primary monocytes fromperipheralblood	blood

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