Variant report

Variant	rs4775795
Chromosome Location	chr15:49292762-49292763
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49277481..49279155-chr15:49292089..49293616,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1054307	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10775139	0.82[CEU][hapmap]
rs11070682	0.88[CEU][hapmap]
rs11638215	1.00[CEU][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11855740	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12903559	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12909616	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16962017	0.88[JPT][hapmap]
rs2899427	0.88[CEU][hapmap]
rs4284578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390538	0.85[CHB][hapmap]
rs4435198	0.82[ASN][1000 genomes]
rs4536401	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4774536	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775790	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4775792	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775796	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493346	1.00[CEU][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7165264	1.00[CEU][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7167402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7183756	0.81[ASN][1000 genomes]
rs7359317	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8029914	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033060	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs8037958	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs877007	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920913	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4775795	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:49280000-49293400	Strong transcription	Adipose Nuclei	Adipose
4	chr15:49280000-49294200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:49280400-49293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:49280400-49294400	Strong transcription	Placenta	Placenta
7	chr15:49281200-49292800	Strong transcription	NHLF	lung
8	chr15:49281600-49293200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:49281600-49293400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:49281600-49293600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:49281600-49293800	Strong transcription	Primary hematopoietic stem cells	blood
12	chr15:49281800-49293000	Strong transcription	Liver	Liver
13	chr15:49282000-49293400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:49282000-49294000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:49282200-49293200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:49282200-49293400	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:49282200-49294800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:49282200-49294800	Strong transcription	Primary B cells from cord blood	blood
19	chr15:49282200-49294800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr15:49282400-49293200	Strong transcription	Fetal Intestine Large	intestine
21	chr15:49282600-49293200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:49282600-49293200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr15:49282600-49293200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr15:49282600-49293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:49282800-49293200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr15:49282800-49293400	Strong transcription	Fetal Muscle Leg	muscle
27	chr15:49282800-49333400	Weak transcription	A549	lung
28	chr15:49283200-49293000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:49283200-49293200	Strong transcription	Fetal Lung	lung
30	chr15:49283200-49294800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr15:49283400-49292800	Strong transcription	Duodenum Mucosa	Duodenum
32	chr15:49283400-49293000	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr15:49283400-49293200	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr15:49283400-49293400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:49283600-49293200	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:49283800-49293400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr15:49284600-49293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:49285000-49299200	Weak transcription	Colonic Mucosa	Colon
40	chr15:49285000-49299400	Weak transcription	Right Ventricle	heart
41	chr15:49285000-49302800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:49285200-49298200	Weak transcription	Colon Smooth Muscle	Colon
44	chr15:49285200-49300200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:49285400-49297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:49285600-49297200	Weak transcription	Fetal Intestine Small	intestine
47	chr15:49285600-49297200	Weak transcription	Fetal Stomach	stomach
48	chr15:49286200-49292800	Strong transcription	Rectal Smooth Muscle	rectum
49	chr15:49286200-49293400	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:49286400-49293200	Strong transcription	Sigmoid Colon	Sigmoid Colon

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