Variant report

Variant	rs9920913
Chromosome Location	chr15:49293730-49293731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1054307	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11638215	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11855740	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12903559	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12909616	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4284578	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4390538	0.82[ASN][1000 genomes]
rs4536401	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4774536	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775790	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4775792	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775795	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775796	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493346	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7165264	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7167402	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7359317	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8029914	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8037958	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs877007	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9920913	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:49280000-49294200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:49280400-49294400	Strong transcription	Placenta	Placenta
5	chr15:49281600-49293800	Strong transcription	Primary hematopoietic stem cells	blood
6	chr15:49282000-49294000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:49282200-49294800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:49282200-49294800	Strong transcription	Primary B cells from cord blood	blood
9	chr15:49282200-49294800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:49282800-49333400	Weak transcription	A549	lung
11	chr15:49283200-49294800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:49285000-49299200	Weak transcription	Colonic Mucosa	Colon
14	chr15:49285000-49299400	Weak transcription	Right Ventricle	heart
15	chr15:49285000-49302800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:49285200-49298200	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:49285200-49300200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:49285400-49297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:49285600-49297200	Weak transcription	Fetal Intestine Small	intestine
21	chr15:49285600-49297200	Weak transcription	Fetal Stomach	stomach
22	chr15:49286600-49294400	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:49287200-49308000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:49287600-49308000	Weak transcription	HepG2	liver
25	chr15:49288200-49294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:49289000-49294800	Strong transcription	Primary T cells from cord blood	blood
27	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr15:49289400-49303800	Weak transcription	Psoas Muscle	Psoas
29	chr15:49289800-49301200	Weak transcription	HMEC	breast
30	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
31	chr15:49290200-49299200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:49291400-49299200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:49291400-49299200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:49291400-49307400	Weak transcription	Gastric	stomach
35	chr15:49291400-49307400	Weak transcription	Pancreas	Pancrea
36	chr15:49291400-49308000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:49291600-49298200	Weak transcription	Thymus	Thymus
38	chr15:49291600-49299200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:49291800-49294200	Weak transcription	Brain Substantia Nigra	brain
40	chr15:49292000-49298200	Weak transcription	Fetal Brain Male	brain
41	chr15:49292200-49298200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:49292200-49299200	Weak transcription	Spleen	Spleen
43	chr15:49292200-49299800	Weak transcription	K562	blood
44	chr15:49292200-49301400	Weak transcription	Aorta	Aorta
45	chr15:49292200-49307800	Weak transcription	NHEK	skin
46	chr15:49292400-49301400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:49292600-49293800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:49292600-49298200	Weak transcription	Osteobl	bone
49	chr15:49292800-49297000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr15:49292800-49297000	Weak transcription	Stomach Smooth Muscle	stomach

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