Variant report

Variant	rs8033060
Chromosome Location	chr15:49284065-49284066
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49283391..49286109-chr15:49287994..49291548,4	K562	blood:

Variant related genes	Relation type
ENSG00000207105	Chromatin interaction
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1054307	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs11070677	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs11070679	0.88[YRI][hapmap]
rs11542124	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11855740	0.83[CHB][hapmap]
rs11858917	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12903559	0.82[ASN][1000 genomes]
rs12904344	0.87[CEU][hapmap];0.80[JPT][hapmap]
rs12916364	0.81[YRI][hapmap]
rs16962017	0.92[CEU][hapmap];0.88[MEX][hapmap]
rs2305195	0.88[YRI][hapmap]
rs4284578	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs4390538	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4435198	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4774536	0.82[ASN][1000 genomes]
rs4775793	0.82[TSI][hapmap]
rs4775795	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs4775796	0.82[ASN][1000 genomes]
rs4775797	0.88[ASW][hapmap];0.80[MEX][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs7166261	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7167402	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs7183756	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8029751	1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8029914	0.89[CHB][hapmap];0.82[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs8033060	MAP1A	cis	cerebellum	SCAN
rs8033060	SPATA5L1	cis	parietal	SCAN
rs8033060	GALK2	cis	lymphoblastoid	seeQTL
rs8033060	GALK2	Cis_1M	lymphoblastoid	RTeQTL
rs8033060	CATSPER2P1	cis	cerebellum	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49284400	Weak transcription	Esophagus	oesophagus
2	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:49269000-49284400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:49269000-49284400	Weak transcription	Spleen	Spleen
5	chr15:49273000-49284400	Weak transcription	Thymus	Thymus
6	chr15:49274200-49284800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:49274800-49284200	Weak transcription	HMEC	breast
8	chr15:49275000-49284400	Weak transcription	HepG2	liver
9	chr15:49276400-49284400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:49276400-49284400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:49277200-49284200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:49277400-49284400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:49277400-49284400	Weak transcription	Aorta	Aorta
14	chr15:49277400-49284400	Weak transcription	Fetal Intestine Small	intestine
15	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:49277600-49284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:49277800-49284400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:49278200-49284200	Weak transcription	HUVEC	blood vessel
19	chr15:49278400-49284400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:49279200-49284200	Weak transcription	Dnd41	blood
21	chr15:49279400-49288800	Strong transcription	HSMM	muscle
22	chr15:49279600-49285200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:49280000-49287400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:49280000-49289000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:49280000-49293400	Strong transcription	Adipose Nuclei	Adipose
26	chr15:49280000-49294200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:49280200-49284200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:49280200-49285200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr15:49280200-49289200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:49280400-49284400	Weak transcription	Pancreas	Pancrea
31	chr15:49280400-49293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:49280400-49294400	Strong transcription	Placenta	Placenta
33	chr15:49280600-49291200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr15:49280800-49284400	Weak transcription	Fetal Stomach	stomach
35	chr15:49281200-49292800	Strong transcription	NHLF	lung
36	chr15:49281600-49293200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:49281600-49293400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:49281600-49293600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:49281600-49293800	Strong transcription	Primary hematopoietic stem cells	blood
40	chr15:49281800-49293000	Strong transcription	Liver	Liver
41	chr15:49282000-49285200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:49282000-49293400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr15:49282000-49294000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:49282200-49284400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr15:49282200-49284600	Strong transcription	GM12878-XiMat	blood
46	chr15:49282200-49285200	Strong transcription	NH-A	brain
47	chr15:49282200-49287400	Strong transcription	Primary T cells from cord blood	blood
48	chr15:49282200-49293200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:49282200-49293400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:49282200-49294800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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